RNA id: TU52042


Basic Information

Item Value
RNA id TU52042
length 771
RNA type TUCP
GC content 0.53
exon number 7
gene id AMCG00013038
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 17880225 ~ 17910017 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCTTCCATATCAACTGAggagacactcacacagagtCTGACAGTGTGCTGTTAATCCAGCTGTGTTCAAGGACAGCAGTTCCAGTCTAAAAGGAGGCAGGACTGCTGGACTCTTTAAATACAGCCTGTCTCATAAGAAGACATCATCCCTGACAtcgagagagatgagagagagagcggacTGTCTCTTGACCAGCAGCACAATGTTTCTTCAAAGTCTTCATGAAACTCTTATCTTGTCCTTGTGCCTCTCTGTGGTGTTGGGCACAGAAAGCACCTGTCCAGTGGTGAAAGTTGTGGGTGTGAACGACAATGAGAGACTGACTCTCCTTCAGGGCTGCCCAGGACACCCAGGGACAGCGGGCAGCCCTGGCACTCCAGGCACCAAGGGAGAACCTGGCCTACCAGGCCCTGAAGGGGTCAGAGGACAACCAGGAGCTTTTGGAAAAATAGGCCCTGTTGGAATCAAAGggcAGAAAGGAGAACCTGGGGATCAATACAGCAGCACCAGGCCTGGGAACTGTAAGGACCTGCTGGACCTGGGGAGCTCCCTGAGCGGCTGGTACACAGTGTACACAGGGAAAGGCAACCCCATACGTGTCTACTGTGACATGACCACTGATGGGGGCGGCTGGCTGGTCTTCCAGAGAAGAATGGatggatcagtggatttctacAGAGACTGGACCTCCTACAAGAGAGGGTTTGGAAACCAGGAGTCAGAGTTCTGGCTGGGGAATGACTATATTCATTCACTGACCAGTGCAGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51919 lncRNA downstream 302469 17577438 ~ 17577756 (-) True G41684
TU51885 lncRNA downstream 368321 17511133 ~ 17511904 (-) True G41655
TU51872 lncRNA downstream 400836 17477815 ~ 17479389 (-) True G41648
TU51871 lncRNA downstream 402955 17476862 ~ 17477270 (-) True G41647
TU51850 lncRNA downstream 577333 17302143 ~ 17302892 (-) True G41627
TU52046 lncRNA upstream 4022 17903448 ~ 17910017 (-) True AMCG00013038
TU52054 lncRNA upstream 17074 17916500 ~ 17916939 (-) True G41773
TU52056 lncRNA upstream 30472 17929898 ~ 18013670 (-) False AMCG00013042
TU52051 lncRNA upstream 70878 17970304 ~ 18056712 (-) False G41772
TU52050 lncRNA upstream 71954 17971380 ~ 17974311 (-) True G41772
AMCG00013037 mRNA downstream 105627 17710609 ~ 17774598 (-) True AMCG00013037
AMCG00013036 mRNA downstream 172300 17693373 ~ 17707925 (-) True AMCG00013036
AMCG00013034 mRNA downstream 282495 17588867 ~ 17597730 (-) True AMCG00013034
AMCG00013028 mRNA downstream 293619 17575807 ~ 17586606 (-) True AMCG00013028
AMCG00013027 mRNA downstream 319219 17559761 ~ 17561006 (-) True AMCG00013027
AMCG00013039 mRNA upstream 14664 17914090 ~ 17914526 (-) True AMCG00013039
AMCG00013042 mRNA upstream 114231 18013657 ~ 18046714 (-) True AMCG00013042
AMCG00013043 mRNA upstream 190267 18089693 ~ 18108396 (-) True AMCG00013043
AMCG00013044 mRNA upstream 240149 18139575 ~ 18149178 (-) True AMCG00013044
AMCG00013049 mRNA upstream 294586 18194012 ~ 18239155 (-) True AMCG00013049
TU50830 other downstream 4764738 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 5626782 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 8767149 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 11424047 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 15696062 2183885 ~ 2184163 (-) True G38490
TU52041 other upstream 54637 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 276635 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 343324 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 1077634 18977060 ~ 18998766 (-) True AMCG00013071
TU52316 other upstream 1077634 18977060 ~ 19022778 (-) False AMCG00013071

Expression Profile