RNA id: AMCG00013040


Basic Information

Item Value
RNA id AMCG00013040
length 2727
RNA type mRNA
GC content 0.46
exon number 2
gene id AMCG00013040
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 17848756 ~ 17852896 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGTTCTCCCCGTGCCCCCCCTCCCAACCTAAACAGGTCTTCATGGTCACTGTAGAGAACTACTTACAGTCCAGCAAATAGCTGAGATCCAGAATAGTGGAAGTATAAAGATTCAATAGGAGGCACTTTATTTAGAAAGCAGCCTGAGGTGAACTGAAAAAACTACTTTGCTCCTCAGATCCTTCAGCAGAAAGACTGGTGAAGGCCTGCGTAGTTCAGGAAGTGGGCAGCAATTGTGGTGCAAAGATGTGGCTGTACCTCCTCCTCCCCATGTGTGAAGCAGCCAGGGGCGAGCACACTGTCAACTGTTCCTCACAGCGCTACCCCACCGTCCCCTGCTCATGGGGGTCAGACACCACCACCCTGGACCTGTCCAATAACCAGATTGAGATGATAACAACCCTGGAATTCTCAAAGGCAAGAGGGCTGAAAAGGCTCCACCTGCAGTTCAATCAGATCAGCTCTGTGGATGAAGATGCCTTCCAACACAACCCCCTGCTGGAATATCTGGATGTCTCATACAACCACCTGGGGGAGATCATCGATGCGCCCCTGAAACCCATCCCATCACTGCTCTACCTTGACATCACCGGCAATGTGTACGACCGCGTGATTTTGGGCCCGGGATTCCGAGGTCTGGAGAAGCTGCAGATCCTCAGGCTTGGGAACCCTCAGGTGGTGTCTCTGAAGGCGAAAGACATGCAGCTGCTCAGGGGCCTCCCATTGAAGGAGCTGCACCTGATCACAGGAGACCTAGGTGAGTACGACGGCGCTCTGAGAGGCCTGAAGAATCTCAACATCCTGACCTTGGAGATTAACGTAAGGATTCATGTACAGACCTTCAAGGTGTTAACGGACGACATCATTAACTCCACCACAACCCTGAAACTGAAGAACCTGGATCTGACGCAGACGCCAAACGTCCCCTTATTCCACTCTGTGGAAAACTCCCCCATAAAATCTGTAACTGTAGAGAACATTTCTATTACCAAGGAGTACTGCACCGCCATGTTCACCAGTTTTCTCTTGTCCAGCATCGCAGAGATTACGATCGACAAAGTTGTTTGCATGGGAACCTGCATCTCCCAGGTCCCCCCCTTCGAGCACAGCACTCTGACCAGCCTTTCTGTATGGAACCTGGACAACCCCTCCATTTACATATTCAGCCCAGGAGGATCTGTGAAAAAGTTCTTCCAGCCCTTTCTCCACCTGTCCCTGGTGAACGCTGTCGTCTTCTTTATGCCCTGCTTGCTGTCACAGGCCATGATCAATCTGGAAACGCTAGATTTCTCCTCTAACACCCTGGACTGCCTCTCTATGTTCCCAGACTGTAACAAGCCCTTACCTAACCTGCGTTCCATGGTGGTCGACAAAAACTTGTTCAAATCGATGCAAATGCTCTCACAGGTGACGAACCACATGAAGCACCTTGTGAACCTATCAGCAAATCACAACACATTCTACCGGGAGATTGGAGTGTGCAACTGGACCCAGAGCCTCAGGAGAATGTCCCTGAGGGGGAATAAGTTTTCCAGCAAAGTTTTACACTGTCTGCCCAGCTCATTGGAAATGCTGGACCTGAGTGTCAATCACATCACTGTTTTGCTCCACCTTGAGAAAATGGTGAATCTCTCCCAGCTATATCTTTCAGACAACCGCATCTTTTCTCTTGCAACTCTTCCTAGACAGCTATCCCTTGCAGTTCTCTATCTGGATGGGAATGATTTACCTGGAGTGAACAGTAGTCTGCTGTCAGCACTTAGGGGGACTGAGTTGAAATTGAGCAACAACCCCTTTGATTGTGGCTGCGACATCTTGACTTTGAAAGGATTCTGTCAAAGTGCCAAAGTGGTGGACTGGGACAAGGACTATCGGTGTGAGAAGCCAGCAAGTCTAAATGGTACAGAACTGCAGTTCCTAACATTACCCCATTGTAGGACAGGACTAATTGTGGGCAGTGTCATTTTGTGCTTGATCCTTGtacctgctgtttttttaattgtcaaaaAATTAAAGAACCGGTGCCATGCTTATAATGAGATCAATTAGACCAATGTTGCCCATGTTTTCTCAACCAGCTGGTACTGAAGAATTGCTAGAAGCCTGGTTGAACcatgattttatttcctttaatacACTTTTAGTACCCGGCATTCATAGATTGCCATAGTCTGTGCTTGCCTTGTTCCATGTTCCAAGTTAATTTGGAAACCAATTTATTTCAACAGATCTTTGCTTTCATAGTTTGCTGCGGGGTAACAGAGAAGTTTTCCTGAACAGTTCAGGCCAGGGGTGTGAGAAATTATCTGGCTGTCTCTTCTGAGCTTCCCTGTTTCCTTTGCCCAGCAGTCCTGCATGGCATTTACATACCAGCtattaagaaaattaatttcatgggcacatatgaatatgaatacaatgTCAAGAAAAATgccacatgtttaaaaaataatatccttTTGAGTGTTTCTAGACTGCAAATTTTCTCATcattttctgagattttctAACAAATGCTTTGGAAGTGGGCATGAGTTGTGCGTTCTAACAGCTTTTACTTTCGccaaaaaaacctaaaaacaaaaaccccagCCAGTGGAATACAGCATAGTCTATATCATTGAGAAGATAAACATTGCAAACTATCATTGCTTTTAACTATTTTGTGTCTTGGGCTGCTTGATGTAGGCTtggagtgaaaataaataaatatgctttgAGGTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51918 lncRNA upstream 271000 17577445 ~ 17577756 (+) True G41683
TU51876 lncRNA upstream 362074 17484653 ~ 17486682 (+) False G41649
TU51877 lncRNA upstream 362174 17484653 ~ 17486582 (+) False G41649
TU51874 lncRNA upstream 364240 17480579 ~ 17484516 (+) True G41649
TU52002 lncRNA downstream 68274 17921170 ~ 17985309 (+) False G41740
TU52009 lncRNA downstream 77039 17929935 ~ 18013678 (+) True G41743
TU52003 lncRNA downstream 106830 17959726 ~ 17985309 (+) True G41740
TU52011 lncRNA downstream 151052 18003948 ~ 18005499 (+) False G41744
TU52012 lncRNA downstream 151052 18003948 ~ 18018513 (+) True G41744
AMCG00013035 mRNA upstream 160116 17657119 ~ 17688640 (+) True AMCG00013035
AMCG00013030 mRNA upstream 210060 17601378 ~ 17638696 (+) True AMCG00013030
AMCG00013033 mRNA upstream 257055 17583125 ~ 17591701 (+) True AMCG00013033
AMCG00013031 mRNA upstream 284812 17562730 ~ 17563944 (+) True AMCG00013031
AMCG00013029 mRNA upstream 291407 17533845 ~ 17557349 (+) True AMCG00013029
AMCG00013041 mRNA downstream 13318 17866214 ~ 17889767 (+) True AMCG00013041
AMCG00013045 mRNA downstream 298556 18151452 ~ 18154122 (+) True AMCG00013045
AMCG00013047 mRNA downstream 305946 18158842 ~ 18230238 (+) False AMCG00013047
AMCG00013046 mRNA downstream 402549 18255445 ~ 18258332 (+) True AMCG00013046
AMCG00013053 mRNA downstream 413372 18266268 ~ 18280801 (+) True AMCG00013053
TU51470 other upstream 2218129 15620785 ~ 15630627 (+) False AMCG00012982
TU51437 other upstream 2369390 15477179 ~ 15479366 (+) True G41264
TU51320 other upstream 2712027 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 3215343 14632357 ~ 14633413 (+) True G41059
TU51114 other upstream 3318950 14528162 ~ 14529806 (+) False AMCG00012940
TU52302 other downstream 1172665 19025561 ~ 19029278 (+) True G41978
TU52747 other downstream 3416779 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 3517947 21370843 ~ 21418787 (+) True AMCG00013126
TU52772 other downstream 3573764 21426660 ~ 21486808 (+) True G42344
TU52771 other downstream 3632011 21484907 ~ 21486808 (+) False G42344

Expression Profile