RNA id: AMCG00013041


Basic Information

Item Value
RNA id AMCG00013041
length 2237
RNA type mRNA
GC content 0.51
exon number 17
gene id AMCG00013041
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 17866214 ~ 17889767 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAACAATTAAACTGGAATAGAAGCAGGACAGCTGGACTGTATAAATACAGCCTGTCTCCATGAGAAGACATCAATGCtgacagcgagagagaggacAGTTTTTTCACCAGCAGCACAATGATTCTCCAGAGGCTTTGTGAAACCTTCATCCTGTCCTTGTGCCTCTCTGTGGTGTTGGGCACAGAAAGCACCTGTCCAGTGGTGAAGGTTGTGGGTGTGAACGACAACGAGAGAATGACTCTCCTTCAGGGCTGTCCAGGACATCCAGGGACAGTGGGCAGCCCTGGCACACCGGGCACCAAGGGAGATCCCGGCCTGCCAGGCCTTCCAGGGGTCAGAGGACAACCAGGAGCTTTCGGAAAAATAGGCCCTGCTGGTAACAAAGggGAGAAAGGAGTACCTGGGAATCAATACAGCGGCACCAGACCTGGGAACTGTAAGGACCTGCTGGACCTGGGGAGCTCCCTGAGCGGCTGGTACACAGTGTACACAGGGGAAGGCAACCCCATCCGCGTCTACTGTGACATGACCACTGACGGCGGGGGCTGGCTGGTCTTCCAGAGAAGGATGGatggatcagtggatttctacAGTGACTGGACCTCCTACAAGAGAGGGTTTGGGAACCAAGAGTCAGACTTCTGGCTGGGGAACGACTATATTCATTCACTGACCAGTGCAGGGACTTATGAATTGAGGGTAGACTTGAAGGATTTCGACAATGTTTCCACTTTTGCAAAATACCAATCCTTTAAGATTCTGGGGGAATCGGAGAACTACAAACTCATTCTGGGTGTATTTGAGGCTGGTGATGCAGGTGATTCCTTGACCGATCAGAACCACCATCTCTTTTCCACCAAAGATCGAGACAACGATGTCTGTGACTGCAACTGTAGTAGCATGTACAAAGGGGGCTGGTGGTATACAAAGTGTCACAGCTCTAACCTGAACGGTCTCTATCTGGGAGGCGCACACGAAAGCTATGCTGATGGAGTCAACTGGTACACTGGCAAAGGCCATAACTATTCCTATAAGCGCTGCGAAATGAAAATTAGACCTCGCTGTGGGATCCTTGAGAagcaaaTGGTGAAAGTTGTGGGTGTGAACGACAACGACAGACTGACCCTCCTCCAGGGCTGCCCAGGACACCCAGGGACAGCAGGCAGTCCTGGCACTCCGGGCACCAAGGGAGAACCCGGCCTGCCAGGCCCTCAAGGGAATCATGAATTGAGGGTTGACTTCCAGGAGTTCGACAATGTTTCCACTTTTGCAAAATACCAGTCCTTTAAGATTCTGGGGGAATCTGAGAACTACAAACTTGTTCTGGGTGGACATGAGGACAGTACTGCAGGTGATTCCTTGACTGGTCACAACAACCTTCTCTTTTCCACCAAAGATCGAGACAATGATGTCTGTGATTGCAACTGTAGTAGCATGTACAAAGGGGCCTGGTGGTATGGGCAGTGTCACAGCTCTAACCTGAACGGTCTCTACCTGGGAGGCGCTCATGAAAGTTATGCCGATGGAATCAACTGGGCAACTGGGAAAGGACATCACTATTCCTATAAGCGCTGCGAAATGAAAATTAGACCTCAactaatTCTAGTTATGAGCTGTGGAATCCTTGagattaaaaCAGTCTGAAAGGAGGCAGGACTGCTGGACTGTATAAATATAGCCTCAATGAGAAGACATCAACGATGATAGTGAGagaaaggacagagagaggaaagctTCTTGACCAGCAGCACAATGATTCTCCAGAGGCTTCGTGAAACCTTCATCTTGTCCTTGTGCCTCTTTGTAGTGTTGGGCAAAGAAAGCACCTGTCCAGTGGTGAAAGTTGTGGGTGTGAACGACAATGAGAGACTGACTCTCCTTCAGGGCTGCCCAGGACACCCTGGGACAGCGGGCAGCCCTGGCACTCCAGGCACCAAGGGAGAACCCGGCCTGCCAGGCCCTCAAGTACTGAACAGAATGACGGAGTGTGAGTGAAAGATGTGGAGCAATCCAGAGAGATTTTCCCTCTCCAGATGGAAATCGTATAATTGCGTTGGATTGCCTCAATCCCTCCAACATCACCCTGGGGACAGCTGCTCCAGTCACAGAGGAATCTGTTTGGCATCTCCATTTCTATGTTTCAGGGGTCAGAGGACAACCAGGAGCTTTTGGAAAAATAGGCCCTGCTGGAATGAAAGGGCAGAAAGGAGAACCTGGGGATCAATACAGCAGCACCA

Function

GO: NA

KEGG:

id description
K10104 FCN; ficolin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51918 lncRNA upstream 288458 17577445 ~ 17577756 (+) True G41683
TU51876 lncRNA upstream 379532 17484653 ~ 17486682 (+) False G41649
TU51877 lncRNA upstream 379632 17484653 ~ 17486582 (+) False G41649
TU51874 lncRNA upstream 381698 17480579 ~ 17484516 (+) True G41649
TU52002 lncRNA downstream 31403 17921170 ~ 17985309 (+) False G41740
TU52009 lncRNA downstream 40168 17929935 ~ 18013678 (+) True G41743
TU52003 lncRNA downstream 69959 17959726 ~ 17985309 (+) True G41740
TU52011 lncRNA downstream 114181 18003948 ~ 18005499 (+) False G41744
TU52012 lncRNA downstream 114181 18003948 ~ 18018513 (+) True G41744
AMCG00013040 mRNA upstream 13318 17848756 ~ 17852896 (+) True AMCG00013040
AMCG00013035 mRNA upstream 177574 17657119 ~ 17688640 (+) True AMCG00013035
AMCG00013030 mRNA upstream 227518 17601378 ~ 17638696 (+) True AMCG00013030
AMCG00013033 mRNA upstream 274513 17583125 ~ 17591701 (+) True AMCG00013033
AMCG00013031 mRNA upstream 302270 17562730 ~ 17563944 (+) True AMCG00013031
AMCG00013045 mRNA downstream 261685 18151452 ~ 18154122 (+) True AMCG00013045
AMCG00013047 mRNA downstream 269075 18158842 ~ 18230238 (+) False AMCG00013047
AMCG00013046 mRNA downstream 365678 18255445 ~ 18258332 (+) True AMCG00013046
AMCG00013053 mRNA downstream 376501 18266268 ~ 18280801 (+) True AMCG00013053
AMCG00013052 mRNA downstream 442958 18332725 ~ 18351553 (+) True AMCG00013052
TU51470 other upstream 2235587 15620785 ~ 15630627 (+) False AMCG00012982
TU51437 other upstream 2386848 15477179 ~ 15479366 (+) True G41264
TU51320 other upstream 2729485 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 3232801 14632357 ~ 14633413 (+) True G41059
TU51114 other upstream 3336408 14528162 ~ 14529806 (+) False AMCG00012940
TU52302 other downstream 1135794 19025561 ~ 19029278 (+) True G41978
TU52747 other downstream 3379908 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 3481076 21370843 ~ 21418787 (+) True AMCG00013126
TU52772 other downstream 3536893 21426660 ~ 21486808 (+) True G42344
TU52771 other downstream 3595140 21484907 ~ 21486808 (+) False G42344

Expression Profile