RNA id: TU52041


Basic Information

Item Value
RNA id TU52041
length 1884
RNA type TUCP
GC content 0.39
exon number 5
gene id AMCG00013042
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 17929898 ~ 18046714 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTAAAGTGACCCAACCCCAGCTTTTCCTCAGTGCTCCAGGCTCTTGTCCAGTCAgctgtcagtgtgccagtgtcaTCCTCTCAGGCCCTGGGAACTGTAAGGACCTGCTGGACCTGGGGAGCTCCCTGAGCGGCTGGTACACAGTGTAAACAGGGGAAGGCAACCCCATACGTGTCTACTGTGACATGACCACTGATGGAGGCGGCTGGCTGAGGAGGATGGatggatcagtggatttctacAGAGATTGGGCCTCCTACAAGAGAGGGTTTGGGAACCAGGAGTCAGAGTTCTGGCTGGGGAATGACTATATTAATTTTCTTACCAGTAAAGGGAATTATGAATTGAGGATAGACTTAATGGATTTTGACAATGTTTCTACTTTTGCAAAATACAAGTCCTTCAAGATTCTTGGGGAATCTGAGAACTACAAACTCAAAATCTGAGAACTACAAATTTAAGGCTGGTAATGCAGGTGATTATCTGTCATATAACAACCAGGCATCCTTCTCCACCTACGATCGTGACAATGATGACTAcaattattactactactataactGTGCCAGTAATTACCAAGGAGCCTGGTGGTACAAATCATGTACTTATGTCAACCTCAACGGCTATTATTATCCTTATTACTACTACTCTGGCAGCTACGGAATCAATTGGCCTGGAGTCTCCTACTACTCCCTGAAGTTTGTTGAGATGAAAATCAGACCTCAGTGAGTGATCATGTCTCTGTGCACAACTGATGGAGAGCTTATTTTCTCTGGGGCTTGTCATATaagtatattttctttctgactgGGAGATGGGTGCTTTATTTTACAGGACAAATTCACTTGATTCACTCACTTGATTCAACAAATTATTAACAGTGTTGCATTAGACCATGAAGCACAGTCCATATGGAAATGTCACTTTGTGGGTTCTTGTGAATCCAGATCTTTTGTTCAGAGACATggtgatttgaatgttttagtAATCATATCACTACTTCCTGAAGACCACTACAGTAAATCAGTTTATATTCATTTGTGTGTAGGGCTGGGAAGAATATCAGaatatttcaattaacattctGATATTTAAATGAGTTTTTACATGTCTTAAGAAACATTTGCCAGTAAAGAAGAATGCATTTAGTGAGTATCTGACCTCACATGAACTGTTATTCTCCACCACAAGCTActgaatttaaacaattattcaaGAATTACAAAACAAGCTAGCTGCACAGCTTCCTGCTCAAGGGAATGCATGGGTTCTACACTTCTGAGGGAAGAGTGTTCACTGAACTGCAGCTTTACATTGAACTCAAACACACTGAAGCAAATCAGTACCGCAATGGATAACAACAGCACACAAAAGAAGGTTTACCAAAATGCTAGATGTCTTACTTGTTAGgtattgttaaatataaacaacatacaCACTAcatttgaactgcttaaatATGATCCTATTTAAAGTATAAAGTCGTAATGGCTATTCCCATTGGCTAACTAATTCAATGCTAAAGCTTATAAGGACATCTGAATATAATTCCATGATCACCCCAGCATCTACAAATGTGTATATCTGGTATTTCTGCAAGTGATTTATGTTGACTGTGATTGTTTTTCCACCTTTGCCATGACGTTGAACAACCAGGTGTGTTTCACCAGAACATTTTCCCTTGTCAGTCTTCACACCATAGCACCTACAATGGTACAACctacagaaaatattgaatgGCTGGTCTAAATTTAATCTGTCCTGAGCTGCATGTCTAATTCATTAAGAAGTCTTCTACATTTTCTATAATGTCTATACTTGTAAATCATGCAAACATTCTGtgaggttaaaataaatgtccttttCAAATGCAGAAAAATATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52054 lncRNA downstream 37124 17916500 ~ 17916939 (-) True G41773
TU52046 lncRNA downstream 44046 17903448 ~ 17910017 (-) True AMCG00013038
TU51919 lncRNA downstream 376307 17577438 ~ 17577756 (-) True G41684
TU51885 lncRNA downstream 442159 17511133 ~ 17511904 (-) True G41655
TU51872 lncRNA downstream 474674 17477815 ~ 17479389 (-) True G41648
TU52098 lncRNA upstream 196378 18239965 ~ 18240369 (-) True G41811
TU52104 lncRNA upstream 196881 18240468 ~ 18242535 (-) True G41813
TU52135 lncRNA upstream 214502 18258089 ~ 18258315 (-) False AMCG00013051
TU52136 lncRNA upstream 215540 18259127 ~ 18259406 (-) True G41839
TU52148 lncRNA upstream 235973 18279560 ~ 18282630 (-) True G41848
AMCG00013039 mRNA downstream 39537 17914090 ~ 17914526 (-) True AMCG00013039
AMCG00013038 mRNA downstream 44734 17880229 ~ 17909329 (-) False AMCG00013038
AMCG00013037 mRNA downstream 179465 17710609 ~ 17774598 (-) True AMCG00013037
AMCG00013036 mRNA downstream 246138 17693373 ~ 17707925 (-) True AMCG00013036
AMCG00013034 mRNA downstream 356333 17588867 ~ 17597730 (-) True AMCG00013034
AMCG00013043 mRNA upstream 46106 18089693 ~ 18108396 (-) True AMCG00013043
AMCG00013044 mRNA upstream 95988 18139575 ~ 18149178 (-) True AMCG00013044
AMCG00013049 mRNA upstream 150425 18194012 ~ 18239155 (-) True AMCG00013049
AMCG00013048 mRNA upstream 200608 18244195 ~ 18255349 (-) True AMCG00013048
AMCG00013051 mRNA upstream 214541 18258128 ~ 18264843 (-) True AMCG00013051
TU52042 other downstream 54637 17880225 ~ 17899426 (-) False AMCG00013038
TU50830 other downstream 4838576 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 5700620 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 8840987 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 11497885 6455721 ~ 6456178 (-) True G39487
TU52091 other upstream 132474 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 199163 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 933473 18977060 ~ 18998766 (-) True AMCG00013071
TU52316 other upstream 933473 18977060 ~ 19022778 (-) False AMCG00013071
TU52331 other upstream 1024658 19068245 ~ 19071418 (-) True AMCG00013070

Expression Profile