RNA id: TU52085


Basic Information

Item Value
RNA id TU52085
length 1882
lncRNA type sense_over
GC content 0.40
exon number 1
gene id AMCG00013047
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 18158842 ~ 18230238 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGACCTTTGTGCAATTATTCTCTTTATTGTAtcagttaatgaaaaaaataacaacttttGTCAAAAACTTAtaggtaattaaaaataaagtgtagcccacatttagttttttttttttttttttctaattctgCCTCAGTACAGACACCCCTTGCAGATGCTTCACGATGCAGTGAAGTTTAGTGTGAGCAGAGAAAAGTCTTAATTCATGGAACAGCACTCAGAACTAATAAAAGGATACTCTGCTTGTTCCTGCTTCTGAGGATCTTAACTGGTCAAATCAAAAGACTGCTTTGATACTTTTTACCCATTTAccttttgttgatttttttataaaaaataaataaaacaaaatcaggatgcatgcatgcatatgaTTTCATTTGGGTCAAAGTTTGTCTTTGTTTCATCTTATTTTCAGCATCCATTGTGGTCTGAGCACAGATCAGACATCTTCCCTCTACACTTTACACTAATTTACCTCACCTCTGTAGCTTTGTCATACTTTTATTATTCATCACTGCTCTAAcctgcggggggggggggtttgtgaAAAAGCAGACAAGattcaatttcaatccaatcAAAAAGCACAGACCTTTAGCACAGCAGACTGTAATCAGCATCCTGATGTCAAGACACAGAATTTGGGGGTTTAGGCTGGTTGAGAATGCTCAACGTGGACTGGAAGGAGTTCGCAGTGTTCCCTAGCCTGTATCATCCCCATGGTTAAAGCAGAAGCCGAGCACCATGATGACTTCTAAATGGAGTAGAGCTTCAGCTGTTCCTCCACATCTCCCTCGGTCATCTCCCCGAATGTGTCCTGGTTCTCCTTGAGCAGCCTGAAGATGGCTGCCAGCTGCTCCCGCTGAactctgaaaacacacacaccagcaacCTGAGCCACTTCAAGCTCCACTGTAAACCCTTACATTGAGTCAGCTGGGAATGGAGTCATGGCGATTCATTCTCCAGATTACGGAGCAGGCAGATGTGGTCCTACACATACATTTCCACAGGCTCTGTTTGATGGTTTCAATCAAGGAGAATTTACAGCATCACAAGGAGGGGAATCTGGGTATTTGCGGTTAAGAAAACCCGTTTCAGTGAGAAATTCCACTCCATTGGAATAGATGTCTTGAATGCCTTATTTGCACAGCAGTGCCAGCATTTTAGAATTCCTACCCTGCCTAACATGATTAACATGATTTCTTAGTGatttcctctttttctctcagttTACATTTGATAGTATTGTTTTCTCTTCAACAACATCGAGGCTGTGTTTCCGGGTAATTGGTGAGGATTGAGGGTTGCACAACTCTATTTGATTCAGCCAGCTCTGCAAAAATGAACTAAAGGCAATGTGAACAGTGACCTTTAACAAAAGGCAAATATGTCCCCCACAACATAAGttatttcatacatttccaTGTTGAAAACACGGGTTAACACATCTGAATACAGCCTTGTACACGATGGGAGTGGATATGATCCCAATTCCTTAACCTAGCGGGTAGTTGTGAGAATAACATCTTGTTACAAATCTCTTCGGTAACAAGCTGCACCACGGCACAACTATGGAACAAGCATAGTTAAAGAGCAGAACTCCTAGGGTAAACTGATCAAGGTAAACCTGCACAAGGACATTTCCTGACCCTTCACTATGCATCtcgaaaatgttttttttttaaaggatagCTGCCAGTCATTGAAAGTTAAGGATCAtgcatcatttaattaaattgtgctgTTAATTGTAATCCTTTGGGTATGGCCCAGTTGTAAGGATTaccataattatttttattaaagacattaagcacatacagtgaggggatttgatcccctgctgattttgtatgtttgcccactgacaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52012 lncRNA upstream 174738 18003948 ~ 18018513 (+) True G41744
TU52009 lncRNA upstream 179573 17929935 ~ 18013678 (+) True G41743
TU52011 lncRNA upstream 187752 18003948 ~ 18005499 (+) False G41744
TU52002 lncRNA upstream 207942 17921170 ~ 17985309 (+) False G41740
TU52003 lncRNA upstream 207942 17959726 ~ 17985309 (+) True G41740
TU52097 lncRNA downstream 44860 18239992 ~ 18240369 (+) True G41810
TU52100 lncRNA downstream 45336 18240468 ~ 18242583 (+) True G41812
TU52102 lncRNA downstream 45336 18240468 ~ 18242548 (+) False G41812
TU52101 lncRNA downstream 45365 18240497 ~ 18242583 (+) False G41812
TU52107 lncRNA downstream 47651 18242783 ~ 18244143 (+) True G41814
AMCG00013045 mRNA upstream 39129 18151452 ~ 18154122 (+) True AMCG00013045
AMCG00013041 mRNA upstream 303484 17866214 ~ 17889767 (+) True AMCG00013041
AMCG00013040 mRNA upstream 340355 17848756 ~ 17852896 (+) True AMCG00013040
AMCG00013035 mRNA upstream 504611 17657119 ~ 17688640 (+) True AMCG00013035
AMCG00013030 mRNA upstream 554555 17601378 ~ 17638696 (+) True AMCG00013030
AMCG00013046 mRNA downstream 60313 18255445 ~ 18258332 (+) True AMCG00013046
AMCG00013053 mRNA downstream 71136 18266268 ~ 18280801 (+) True AMCG00013053
AMCG00013052 mRNA downstream 137593 18332725 ~ 18351553 (+) True AMCG00013052
AMCG00013054 mRNA downstream 164423 18359555 ~ 18362887 (+) True AMCG00013054
AMCG00013057 mRNA downstream 193679 18388811 ~ 18396122 (+) True AMCG00013057
TU51470 other upstream 2562624 15620785 ~ 15630627 (+) False AMCG00012982
TU51437 other upstream 2713885 15477179 ~ 15479366 (+) True G41264
TU51320 other upstream 3056522 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 3559838 14632357 ~ 14633413 (+) True G41059
TU51114 other upstream 3663445 14528162 ~ 14529806 (+) False AMCG00012940
TU52302 other downstream 830429 19025561 ~ 19029278 (+) True G41978
TU52747 other downstream 3074543 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 3175711 21370843 ~ 21418787 (+) True AMCG00013126
TU52772 other downstream 3231528 21426660 ~ 21486808 (+) True G42344
TU52771 other downstream 3289775 21484907 ~ 21486808 (+) False G42344

Expression Profile