RNA id: AMCG00013050


Basic Information

Item Value
RNA id AMCG00013050
length 360
RNA type mRNA
GC content 0.63
exon number 1
gene id AMCG00013050
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 18265139 ~ 18265498 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTTACGGTAGGCCGCCACCCGATGTTGAGGGCATGACTTCACTCAAAGTGGACAACTTGACTTATCGGACATCGCCAGAGACGCTGCGGAGGGTCTTCGAGAAGTACGGCCGCGTCGGAGACGTGTACATCCCCCGTGACCGGTACACGAAGGAGAGCCGAGGGTTCGCCTTTGTTCGCTTCCACGACAAGCGGGATGCCGAAGACGCGATGGATGCCATGGACGGAGCTGTGCTGGACGGGCGGGAACTGAGGGTGCAGATGGCCCGCTACGGGCGTCCCCCGGAGTCTCATCACGGGCGCCGCGGAGGCCCACCCCGGAGGTACGGGGGATACGGCAGGCGAAGCAGAAGgtaa

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K12891 SRSF2_8, SFRS2A_B; serine/arginine-rich splicing factor 2/8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52136 lncRNA downstream 5733 18259127 ~ 18259406 (-) True G41839
TU52135 lncRNA downstream 6824 18258089 ~ 18258315 (-) False AMCG00013051
TU52104 lncRNA downstream 22604 18240468 ~ 18242535 (-) True G41813
TU52098 lncRNA downstream 24770 18239965 ~ 18240369 (-) True G41811
TU52051 lncRNA downstream 208427 17970304 ~ 18056712 (-) False G41772
TU52148 lncRNA upstream 14062 18279560 ~ 18282630 (-) True G41848
TU52149 lncRNA upstream 18130 18283628 ~ 18284531 (-) True G41849
TU52150 lncRNA upstream 20053 18285551 ~ 18285996 (-) True G41850
TU52151 lncRNA upstream 30147 18295645 ~ 18295946 (-) True G41851
TU52161 lncRNA upstream 66312 18331810 ~ 18386206 (-) False G41858
AMCG00013051 mRNA downstream 296 18258128 ~ 18264843 (-) True AMCG00013051
AMCG00013048 mRNA downstream 9790 18244195 ~ 18255349 (-) True AMCG00013048
AMCG00013049 mRNA downstream 25984 18194012 ~ 18239155 (-) True AMCG00013049
AMCG00013044 mRNA downstream 115961 18139575 ~ 18149178 (-) True AMCG00013044
AMCG00013043 mRNA downstream 156743 18089693 ~ 18108396 (-) True AMCG00013043
AMCG00013055 mRNA upstream 26672 18292170 ~ 18293312 (-) True AMCG00013055
AMCG00013063 mRNA upstream 293450 18558948 ~ 18564943 (-) True AMCG00013063
AMCG00013065 mRNA upstream 507127 18772625 ~ 18788291 (-) True AMCG00013065
AMCG00013066 mRNA upstream 539514 18805012 ~ 18820165 (-) True AMCG00013066
AMCG00013067 mRNA upstream 653066 18918564 ~ 18926388 (-) True AMCG00013067
TU52133 other downstream 21046 18242750 ~ 18244093 (-) True G41836
TU52091 other downstream 73617 18176061 ~ 18191522 (-) True G41807
TU52041 other downstream 221552 17954063 ~ 18043587 (-) False AMCG00013042
TU52042 other downstream 365713 17880225 ~ 17899426 (-) False AMCG00013038
TU50830 other downstream 5149652 13114893 ~ 13115487 (-) True G40778
TU52315 other upstream 711562 18977060 ~ 18998766 (-) True AMCG00013071
TU52316 other upstream 711562 18977060 ~ 19022778 (-) False AMCG00013071
TU52331 other upstream 802747 19068245 ~ 19071418 (-) True AMCG00013070
TU52412 other upstream 1714838 19980336 ~ 19982880 (-) True G42076
TU52536 other upstream 2265696 20531194 ~ 20545811 (-) True AMCG00013090

Expression Profile