RNA id: AMCG00013053


Basic Information

Item Value
RNA id AMCG00013053
length 2514
RNA type mRNA
GC content 0.49
exon number 13
gene id AMCG00013053
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 18266268 ~ 18280801 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAACATCCATTAATATACCGCATTGTGTCAGAGAGTTCTGCCTAACGCAATTCGGCAGATAGTGTAATGGTTAAACAAGCGCTTTTCcatatcttttatttattgtgcattGGACACAACATGACCGAGTCAAAACTTCATATCCCGAAAGCCGCGCTGCAGTGCTGCCTGCGAGGTCAGCTGACCAGCTCACATGACACGCCAGGCTCAGTCATACCCCGAATGAAATACTTTATTGCTGGGGAGTTACCGCTTCAATGTTGGACGGAGAACTGTAAATAAAGCTTCatcatctgattttttttttgtattgttgacTTTGGACTGTGGCTGGGACTTCAGTATGGTTACCAGCAGTACGAGAAACTAACCGTCAATAAAACGCACATTCATATTCACTCAAGAGTTCATCACAAGtaggGTTTGTGAAACGCCTTCGTGTTGGGTACAAGGACAACCGCAGACATGTCTCCTGAAGGCAAAACCCTCCTAAACATTATAATCCTAGGTTTCgggtttatgtttatgtttactGCCTTTCAGACCTGCGGGAATGTAGAGCAAACCGTGATAAAGAATTTTAACAGCACTGACTTCCATGGCAGTGGATATACAagCATGGCCATTATATATGGGGTGTTCTCGGCCTCGAACCTCATTGCACCGTCTGTAGTGGCTGTAATTGGACCACAACTGTCGATGTTCATAAGCGGTCTGGTGTACAGTGGTTATATTGCAGTGTTCATCTATCCTTTGACCTGGTCTTTCTACACGGCCTCTGTAGTGGTTGGCATAGCAGCAGCAGTCTTATGGACAGCCCAGGGCAACCTTCTGACCATCAACTCTACAGATGACACCATTGGCAGAAACAGTGGGATCTTCTGGGCTTTGTTGCAGTTCAGGGACCGGCGAACAGTCTTCATCTCCCTGACGGTGATCAGCCTGGTTGGCagcttcctcttcttcctcatcAGGAGTCCCGAACCTGAGGCCACTCCTTCTGAAGCATCTGAATCTCTCCTGCAGGCAGAGTCTGCCGATATCCAGAGCACTGCACCGACACCACCAGGAGTACGCTCCCCAGCCCTGGAGGCATTCAAGAAAGCCCTTCAGCTGTGCTTCACCAAAGAGATGATGCTCCTTAGTATCTCCATTGCATACACAGGCCTGGAGCTGACGTTCTACAGTGGTGTCTATGGCACCTGCATTGGTGCCATGACCCGCTTTGGTGACGATGCCAAGGGTCTGATTGGGCTGTCTGGCATTTTCATTGGCATTGGAGAGATCCTAGGAGGGGGCTTCTTCGGCATGCTCAATAAGCGTAACCGTTTCGGAAGGAATCCCGTGGTACTACTGGGACTGGTCACCCACTACCTGGCATTTTACCTGATCTTCCTGAACATTGCCAGTGACGCGCCGATCGCCCCTGAGGAGGGAACCCAGTTGCAGGCCTTCATTACACCCAGTGTGCAGGTAGCTCTGCTGTGCAGTTTCCTGCTGGGCTTGGGAGACAGCTGCTTCAACACCCAACTGCTGAGCATTGTGGGATTCATGTTCCCGGAAGACAGCGCCCCAGCCTTCGCCATTTTCAAATTCATCCAGTCCATCAGTGCGGCGGTGGCCTTCTTCTACAGCAACTACCTCCTCTTGCAGTGGCAGCTCCTCATCATGGTAATCACAGGCTTCTTCGGGACCCTGAACTTCTTCCTGGCTGAACGGCTGGCTGTGTCAATTAGGCGAGACTCCGACTACGACAGCATCTGACTAGAGGGAGTGGCCACAGAGATCCCCGCTCGCTGGGAGTGGAGAACATTAACTGAGTGTTCCAGGGGTGGGCAGGGAGTTCGCCCATGCGTCCCCACTGCTCATGACTGACACAGCACTCGGGGTTGTGGAGTTCCCCAaccccccctccttctcccttcCCACCATCTCACCGCCATTCACCCTTCCAAGTTCCCCTAGCAATTGTTTGCACACACGGCCAGCAAAAACGCACACTGGAACCCAGAGCTACCTAAAAGTAGACATCAGCTTcactaaaaacacaaatcaccaAACCAGAGTTTGTCCATGCATCACAGACTAACTCACAGTGGGTCAAGATGGAATatgtggttgttttctttttgttttgtttgtttgtttcactttgGTCGCAGAGTCAAATCTTGCCCAAGTGACTGATTCGCTTTCATGCTTTCACAGCGAAATCATTTACAGTTTCCTTGTTTGACTGAAATTGCTAGGCCGTTAGAGAATGTTAGTTCTGGAGGTAGTCAACTTTTATCACAATTCTACCCAGCTCAGAATCAAACCCAAACAGGCAAAACTGAAAGGGAATGAAACTGGATTCCAAACATGTAAATACAGACTGATTTGTCATCGCATCTGCTTGTACAGTAAATGAAAACCGATTTCACAAATTAATGCGAATTTTGCACTTAAAGTACAGATTTCTCAAATTTCTGGGCTCACATTTGAAACGTGCACACCCAAATAGAGgaaccgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52112 lncRNA upstream 573 18261963 ~ 18265695 (+) True G41818
TU52107 lncRNA upstream 22125 18242783 ~ 18244143 (+) True G41814
TU52100 lncRNA upstream 23685 18240468 ~ 18242583 (+) True G41812
TU52101 lncRNA upstream 23685 18240497 ~ 18242583 (+) False G41812
TU52102 lncRNA upstream 23720 18240468 ~ 18242548 (+) False G41812
TU52115 lncRNA downstream 2827 18283628 ~ 18284855 (+) True G41821
TU52116 lncRNA downstream 14844 18295645 ~ 18295946 (+) True G41822
TU52117 lncRNA downstream 17824 18298625 ~ 18298914 (+) True G41823
TU52226 lncRNA downstream 379453 18660254 ~ 18660522 (+) True G41908
TU52244 lncRNA downstream 416019 18696820 ~ 18697632 (+) True G41924
AMCG00013046 mRNA upstream 7936 18255445 ~ 18258332 (+) True AMCG00013046
AMCG00013047 mRNA upstream 36030 18158842 ~ 18230238 (+) False AMCG00013047
AMCG00013045 mRNA upstream 112146 18151452 ~ 18154122 (+) True AMCG00013045
AMCG00013041 mRNA upstream 376501 17866214 ~ 17889767 (+) True AMCG00013041
AMCG00013040 mRNA upstream 413372 17848756 ~ 17852896 (+) True AMCG00013040
AMCG00013052 mRNA downstream 51924 18332725 ~ 18351553 (+) True AMCG00013052
AMCG00013054 mRNA downstream 78754 18359555 ~ 18362887 (+) True AMCG00013054
AMCG00013057 mRNA downstream 108010 18388811 ~ 18396122 (+) True AMCG00013057
AMCG00013056 mRNA downstream 125910 18406711 ~ 18433678 (+) True AMCG00013056
AMCG00013061 mRNA downstream 159794 18440595 ~ 18444746 (+) True AMCG00013061
TU51470 other upstream 2635641 15620785 ~ 15630627 (+) False AMCG00012982
TU51437 other upstream 2786902 15477179 ~ 15479366 (+) True G41264
TU51320 other upstream 3129539 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 3632855 14632357 ~ 14633413 (+) True G41059
TU51114 other upstream 3736462 14528162 ~ 14529806 (+) False AMCG00012940
TU52302 other downstream 744760 19025561 ~ 19029278 (+) True G41978
TU52747 other downstream 2988874 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 3090042 21370843 ~ 21418787 (+) True AMCG00013126
TU52772 other downstream 3145859 21426660 ~ 21486808 (+) True G42344
TU52771 other downstream 3204106 21484907 ~ 21486808 (+) False G42344

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000351_01165103_01169247.mRNA True 1466 mRNA 0.47 11 CI01000351 1165103 ~ 1169506 (+)