RNA id: AMCG00013057


Basic Information

Item Value
RNA id AMCG00013057
length 225
RNA type mRNA
GC content 0.50
exon number 2
gene id AMCG00013057
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 18388811 ~ 18396122 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAGCTTTAACGAGTCGGCAAAATGCAGGAGTGGAAGAAGTCGACATCCCTTCTAATTCTGTCTACAGATACCCACCGAAATCGGGCAGCTACTTTGCCAGCCACTTCATCATGGGAGGAGAGAAGTTTGATTCTACTCACCCAGAGGGCTATCTGTTTGGAGAGAACACAGACCTTAACTTCCTGGGCAACAGACCTGTGGCGGTATGTTCTGACCCGTGA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52117 lncRNA upstream 89897 18298625 ~ 18298914 (+) True G41823
TU52116 lncRNA upstream 92865 18295645 ~ 18295946 (+) True G41822
TU52115 lncRNA upstream 103956 18283628 ~ 18284855 (+) True G41821
TU52112 lncRNA upstream 123116 18261963 ~ 18265695 (+) True G41818
TU52107 lncRNA upstream 144668 18242783 ~ 18244143 (+) True G41814
TU52226 lncRNA downstream 264132 18660254 ~ 18660522 (+) True G41908
TU52244 lncRNA downstream 300698 18696820 ~ 18697632 (+) True G41924
TU52293 lncRNA downstream 573789 18969911 ~ 18974362 (+) True AMCG00013068
TU52294 lncRNA downstream 573789 18969911 ~ 18973021 (+) False AMCG00013068
TU52295 lncRNA downstream 573789 18969911 ~ 18974362 (+) False AMCG00013068
AMCG00013054 mRNA upstream 25924 18359555 ~ 18362887 (+) True AMCG00013054
AMCG00013052 mRNA upstream 37258 18332725 ~ 18351553 (+) True AMCG00013052
AMCG00013053 mRNA upstream 108010 18266268 ~ 18280801 (+) True AMCG00013053
AMCG00013046 mRNA upstream 130479 18255445 ~ 18258332 (+) True AMCG00013046
AMCG00013047 mRNA upstream 158573 18158842 ~ 18230238 (+) False AMCG00013047
AMCG00013056 mRNA downstream 10589 18406711 ~ 18433678 (+) True AMCG00013056
AMCG00013061 mRNA downstream 44473 18440595 ~ 18444746 (+) True AMCG00013061
AMCG00013059 mRNA downstream 66469 18462591 ~ 18471589 (+) True AMCG00013059
AMCG00013060 mRNA downstream 82575 18478697 ~ 18504972 (+) True AMCG00013060
AMCG00013062 mRNA downstream 116450 18512572 ~ 18513860 (+) True AMCG00013062
TU51470 other upstream 2758184 15620785 ~ 15630627 (+) False AMCG00012982
TU51437 other upstream 2909445 15477179 ~ 15479366 (+) True G41264
TU51320 other upstream 3252082 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 3755398 14632357 ~ 14633413 (+) True G41059
TU51114 other upstream 3859005 14528162 ~ 14529806 (+) False AMCG00012940
TU52302 other downstream 629439 19025561 ~ 19029278 (+) True G41978
TU52747 other downstream 2873553 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 2974721 21370843 ~ 21418787 (+) True AMCG00013126
TU52772 other downstream 3030538 21426660 ~ 21486808 (+) True G42344
TU52771 other downstream 3088785 21484907 ~ 21486808 (+) False G42344

Expression Profile