RNA id: AMCG00013060


Basic Information

Item Value
RNA id AMCG00013060
length 2276
RNA type mRNA
GC content 0.45
exon number 10
gene id AMCG00013060
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 18478697 ~ 18504972 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCATGTGGtgcattgttttgttcatgACCCTGACCATAGTGGGTCAGATTTCCTCCGAAGAAGAATGCAGTTTCCACTACCTTCTGAAGCACCTGAACATCACCAATGACAAGGAGCGCTTCGCCATGACTAGGCCGTATGAAGACATTGCATCTGTACTGGCTGAGAGCAATAATTATGACAAGATCGGACGCATCAGCACCAATACGCTCAAGTTGGTCCTTAAACCCTTCAAAGAGGCAACTGACGACTTGGAAACCGAGAACACAGCTCCAAGTGCCTCACTGGTTCTTCCGAGTATTTCTCCTTGTCAGATTGAGAAATCCCAAATGTTCATTGCCTATTTCTGGGTCATTTTGGACTggaaaaatgattttatttcttgggATCCCGATGCGTTTTGTGGAATTAACAAGTTTCTTGTTCCTAGAGAGCTTCTGTGGACTCCTGATTTTATGATTCTTGAGACCATAGAGGAGGACAAAACGCAGAAGTCTCCCTACTTGACTATCACATCTCAAGGCAAGGTGACTTTAGATGAAGATATCCGATTGGTCAGTGCCTGCAGAATGAAAGTCCATCATTTTCCTTTTGACACGCAAAAATGCAATCTCACTTTTACATCTATATCCCACACAGTGGAGCAAGTCAAGTTTGCTTCAGCCATCAATTCCACCAGAGCCACAGATCTCACCTCTTCGACTCTAAGGGAGGAGGGAGACTGGAGATTTCTGAATATGATTGTGTTTAACTCATCATTAGAAGAAGGTAATCTGAACTTCAGTGAAATTGTATACGAGATGGAAATCAAACGGTGGCCTGTCCTCTACTTGGTGAATGTTGTGCTGCCTGTCGTGTTCTTCCTTGTCCTGGACATTTTCTCCTTCTTCATTGCGGACTCCAGAGGGGATAAGCTGGGCTTTAAGGTGACCGTCCTCCTGGCCATTTCTGTCATGATGTTGATACTGAAAGATCTCCTCCCGGCCATGTCCAATCAGTCCCCTCTGATCGTAACCTTCTTCATTGTGGTCTTCGCCTTCATGCTGATGAGTCTCCTGGAGACTATTCTCATCACATACCTGATGGAGCTGGACTCTGCTGCCCCCCCCAGGAAACACCGgagctgctgcacagtggcTTCTGCTGGGGGCTGCAGGAAAGGAGAGCCAGAGTGCCCCTCCCAGCCGAACTCCACAGAGGGGCAGAGTGAGCTCTCCGTGGAAGCGGGGGGATTCGAGAGCCTCTTGTTCGAGCTGCGGAGCCTGCACAAGAGCCTGGGGGAAATaccgagagagagggagagagagcccGCCTACTGGGGGAGAGTGGCCAAGCACATCAACAGGATCTACCTGTGCTGCTATCTGCTCTCTGTGGTGGTGTTTCTGGTCTGCATGTACCGCGCATGGACTGCAGAGTCTGAGCAATGAGTGCAATGTTTTCTGTCCTTACTCTGTCACACTCCGCTCCCTCCCCGGCTCAGCTAGGTGTCTGTCACTCTCAGTACCCTgttctcccctccctctctgttccctctgaatttgtatttcacaCACAATACCATCACAATCAATTATCCCCTCCAGGCACCATTAGCACGATTATATACACCACATCTATCAGGTATGGTGACAATGTGTCTTAGAACAAGGGGTTAGAACAAGATTTTCTATTTACTTGCATAAGAAAAATTGTGTGGTGAGCCAGCCTGTCCAACACGGAATCTTTGAACTTTCCAcggaattaaaaagaaatagaaaaactgCATATGACATGATTTTTTCTTCTGGAAATTAGAAGAGACATATTGGGTATTGCtacaaatattgtaatgaaACCTTGACTCTTTTTATTGGATACAATATCTTGTTTCTTTCCGATGTTTCACTACCTTTATCTTCCTTGGTCTTCCTTGATCTcatttccttttgctttttacaTAACTTGTATGGACATATTATatggacagcagtgtggagtagtgcttacggctctggactcatgagaAGTAGGTCATGGATTCAATCTCtggtggggacactgctgttgtacccttgagcatggtactgtacctagattgttccagtaaaaacccagctgtataaatgggtaattgtatgttaaaataatgtgacataTTGTAATGGATAAGagagtctgctaagaaatataatgataatatggAAGCACTTTATATTGAGTGTGGCAAACAAAGGattaatatacaccgatcagccataacattatgaccactgacaggtgaagtgaatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52117 lncRNA upstream 179783 18298625 ~ 18298914 (+) True G41823
TU52116 lncRNA upstream 182751 18295645 ~ 18295946 (+) True G41822
TU52115 lncRNA upstream 193842 18283628 ~ 18284855 (+) True G41821
TU52112 lncRNA upstream 213002 18261963 ~ 18265695 (+) True G41818
TU52107 lncRNA upstream 234554 18242783 ~ 18244143 (+) True G41814
TU52226 lncRNA downstream 155282 18660254 ~ 18660522 (+) True G41908
TU52244 lncRNA downstream 191848 18696820 ~ 18697632 (+) True G41924
TU52293 lncRNA downstream 464939 18969911 ~ 18974362 (+) True AMCG00013068
TU52294 lncRNA downstream 464939 18969911 ~ 18973021 (+) False AMCG00013068
TU52295 lncRNA downstream 464939 18969911 ~ 18974362 (+) False AMCG00013068
AMCG00013059 mRNA upstream 7108 18462591 ~ 18471589 (+) True AMCG00013059
AMCG00013061 mRNA upstream 33951 18440595 ~ 18444746 (+) True AMCG00013061
AMCG00013056 mRNA upstream 45019 18406711 ~ 18433678 (+) True AMCG00013056
AMCG00013057 mRNA upstream 82575 18388811 ~ 18396122 (+) True AMCG00013057
AMCG00013054 mRNA upstream 115810 18359555 ~ 18362887 (+) True AMCG00013054
AMCG00013062 mRNA downstream 7600 18512572 ~ 18513860 (+) True AMCG00013062
AMCG00013058 mRNA downstream 48281 18553253 ~ 18559281 (+) True AMCG00013058
AMCG00013064 mRNA downstream 187024 18691996 ~ 18692751 (+) True AMCG00013064
AMCG00013068 mRNA downstream 462457 18967429 ~ 18971068 (+) False AMCG00013068
AMCG00013073 mRNA downstream 543512 19048484 ~ 19064539 (+) True AMCG00013073
TU51470 other upstream 2848070 15620785 ~ 15630627 (+) False AMCG00012982
TU51437 other upstream 2999331 15477179 ~ 15479366 (+) True G41264
TU51320 other upstream 3341968 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 3845284 14632357 ~ 14633413 (+) True G41059
TU51114 other upstream 3948891 14528162 ~ 14529806 (+) False AMCG00012940
TU52302 other downstream 520589 19025561 ~ 19029278 (+) True G41978
TU52747 other downstream 2764703 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 2865871 21370843 ~ 21418787 (+) True AMCG00013126
TU52772 other downstream 2921688 21426660 ~ 21486808 (+) True G42344
TU52771 other downstream 2979935 21484907 ~ 21486808 (+) False G42344

Expression Profile