RNA id: AMCG00013062



Basic Information


Item Value
RNA id AMCG00013062
length 720
RNA type mRNA
GC content 0.52
exon number 3
gene id AMCG00013062
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 18512572 ~ 18513860 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCTGGTGTCCTGTGTGATAACCATGGCATTGTATTGCTACTCTGCCCCTGCTGTTCCTGGACTGTGGCTGACCTGTCTCTTTGCTTCTGCAGTGGAGGAAATAATGTTAGTCCCATCCTCCAATTCCACAAGAGCCACAGATATCTCCTTGAAAGTGCTGCAAAGCCAGGGAGACTGGGAATTTCTGAACATGTTGGTGTGCAATTCATCCTTGACGATGGACAGTGAAAAATGGGAGGCAATTACATATGAGATCTCCATCAGAAGAAGACCCATACTCTACGTGACCAATTTCCTGCTGCCCATCTTGTTTTTCCTCATCCTGGATATCTCCTCATTCTTCATTTCGGATGGCAGAGGTGAGAAGCTGGGCTTTAAGGTGACGGTGCTCCTGGCCATCTCTGTCATGCTGTTGATCCTGCAGGACATCCTCCCGGCCACATCCAATGAGTGTCCTCTGATTGGGTGTGACCCAGACTCCACAGAGGGGCAGAGTGAGCTCTCCATGGAAGCAGGGGGCTTCGAGAGCCTCTTGTTCGAGCTGCGGAGCCTGCACAAGAGCCTGGGGGAGATAccgagagacagggagagagagcccGCCTACTGGGGGAGAGTGGCCAAGCACATCAACAGGATCTACCTGTGCTGCTATCTGCTCTCTGTGGTGGTGTTTCTGGTCTGCATGTACCGCGCATGGACTGCAGAGCCTGAGCAATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU52117 lncRNA upstream 213658 18298625 ~ 18298914 (+) True G41823
TU52116 lncRNA upstream 216626 18295645 ~ 18295946 (+) True G41822
TU52115 lncRNA upstream 227717 18283628 ~ 18284855 (+) True G41821
TU52112 lncRNA upstream 246877 18261963 ~ 18265695 (+) True G41818
TU52107 lncRNA upstream 268429 18242783 ~ 18244143 (+) True G41814
TU52226 lncRNA downstream 146394 18660254 ~ 18660522 (+) True G41908
TU52244 lncRNA downstream 182960 18696820 ~ 18697632 (+) True G41924
TU52293 lncRNA downstream 456051 18969911 ~ 18974362 (+) True AMCG00013068
TU52294 lncRNA downstream 456051 18969911 ~ 18973021 (+) False AMCG00013068
TU52295 lncRNA downstream 456051 18969911 ~ 18974362 (+) False AMCG00013068
AMCG00013060 mRNA upstream 7600 18478697 ~ 18504972 (+) True AMCG00013060
AMCG00013059 mRNA upstream 40983 18462591 ~ 18471589 (+) True AMCG00013059
AMCG00013061 mRNA upstream 67826 18440595 ~ 18444746 (+) True AMCG00013061
AMCG00013056 mRNA upstream 78894 18406711 ~ 18433678 (+) True AMCG00013056
AMCG00013057 mRNA upstream 116450 18388811 ~ 18396122 (+) True AMCG00013057
AMCG00013058 mRNA downstream 39393 18553253 ~ 18559281 (+) True AMCG00013058
AMCG00013064 mRNA downstream 178136 18691996 ~ 18692751 (+) True AMCG00013064
AMCG00013068 mRNA downstream 453569 18967429 ~ 18971068 (+) False AMCG00013068
AMCG00013073 mRNA downstream 534624 19048484 ~ 19064539 (+) True AMCG00013073
AMCG00013074 mRNA downstream 558376 19072236 ~ 19077701 (+) True AMCG00013074
TU51470 other upstream 2881945 15620785 ~ 15630627 (+) False AMCG00012982
TU51437 other upstream 3033206 15477179 ~ 15479366 (+) True G41264
TU51320 other upstream 3375843 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 3879159 14632357 ~ 14633413 (+) True G41059
TU51114 other upstream 3982766 14528162 ~ 14529806 (+) False AMCG00012940
TU52302 other downstream 511701 19025561 ~ 19029278 (+) True G41978
TU52747 other downstream 2755815 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 2856983 21370843 ~ 21418787 (+) True AMCG00013126
TU52772 other downstream 2912800 21426660 ~ 21486808 (+) True G42344
TU52771 other downstream 2971047 21484907 ~ 21486808 (+) False G42344

Expression Profile