RNA id: TCONS_00009302


Basic Information

Item Value
RNA id TCONS_00009302
length 3780
RNA type mRNA
GC content 0.51
exon number 26
gene id XLOC_004697
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 22404108 ~ 22445061 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAGCTCTGTGGCAGTGTTGACTCAGGAGAGTTTTGCCGAGCACCGCAGTGGCTTGAAGGACGTTCAGATCATGGGTAGTGCACCAGAGGATGAGGCCTATATACCCACCTATCTGGAGGCCTTTCCTCCTTTACCGGAAAAGGGCTCTCCAGGTGAGAAGTCGGGTGAACCAGCAGGTGCCTGGAGCAAAATCAGACCCATCAAAGCCTCTGTCATCACTCAGGTGTTTCATGTCCCTCTGGAGGAGCGGCGGTATAAAGACAACAGTCAGTTCGGTGAGGGTGAAGAGGCGAAAGTGTGCCTGGACATCATGCAGAAAACCGGAGCGCACATCGAACTGTCTCTTGCCAAGGACCAAGGCCTCTCCATCATGGTGACCGGAAAACTGGACTCGGTCATGAAAGCAAGGAAGGAGATTGTGGCTCGACTGCAGACTCAGGCCTCTGCAACTGTGCTTATCCCAAAAGAACATCATCGATTTGTGATCGGAAAGAATGGGGAAAAGTTGCAGGAACTGGAGTTAAAAACAGCGACCAAGATCGCCATTCCTCGCTCTGACGATCCCAACGCCAACATCCGCATCACTGGCACCAAGGAAGGCATTGAGAAAGCTCGCCATGAAATTCAACTAATCTCCGCAGAGCAGGACAAGCGTGCTGTGGAACGTTTGTGTTTTGAGAAAGCTTTTCATCCATTCATCGCCGGTGCTTATAATCGACTCGTTCAAGAGCTGAGTCAGGAGACCGGAGCTCGTATTAGCATCCCACCACCCAGCATTCCCAAAGATGAGATCGTCATTACTGGAGAGAAAGAGGCGGTGGCGATGGCCATCGCACGCATCCGGGCCACCTATGAAGAGAAGAAACGAAAAACTACCACAATCTCGGTGGAGGTGAAAAAGTCCCAACACAAGTACATTGTTGGCCCAAAAGGAAACACCCTGCAGGAGATCTTGGAGAACACAGGGGTGTCTGTGGAAATGCCTCCTTTGGACTCCGCATCCGAGACCATCATCCTCCGAGGAGAGCCAGATAAACTAGGTCCTGCTCTTACACAGGTCTACGCCAAGGCTAAAAGTGTTATAGTGGCAGAAGTGATTGCTCCGGCTTGGCTTCATCGATTCATCATTGGCAAGAAAGGACAAAACATCAGTCGCATTACACAGCAGCTGCCTAAGGTTCATATAGAGTTCACTGATGGAGAGGAGCGCATTTGTCTAGAGGGACCGACAGAGGAGGTGGAACAAGCCCAGATTCAGATACAGGAGATCATCAAAGACCTGATGGTGAGAATGGACTATACAGAGATTAACATTGATCAGCGTTTCCACAGACACCTCATAGGCAAAAACGGAGCCAACATAAACCGGATAAAGGAGCAGTACAAGGTATCGGTGAGGATTCCTCAGGACTCGGAGCGCTGTGGTTTGGTTCGCATTGAAGGTGATCCTCAGGGAGTGCAGCTTGCTCGCAAAGAACTGATGGACATGGCCCAGCGGATGGAAAATGAACGCACAAAGGACCTGATCATAGAGCAGAAGTTTCACCGCACCATCATTGGGCAGAAAGGAGAGAAGATCAAAGAAGTGCGCGACAAGTTTCCTGAGGTTATCATCATTTTTCCAGACCAGCAACAGAAAAGTGACATAGTGCAGCTGCGGGGCCCCAAAAATGAGGTGGAGAAATGTGCAAAGTTTCTGCAGAAACTCATCGCTGAGCTGGTTGAGAGCAGCTTCTCAATTTCTGTACCCATTCATAAGCAGTTCCACAAAAACATTATTGGCAAAGGAGGTGCCAACATTAAGAAGATACGAGAGGAAACCAACACCAAGATTGATCTCCCAACGGAAAACAGCAACTCTGAAGTGATTGTAATAACAGGCAAAAAGAGCAACTGTGAAGCTGCACGAGAACGAATCCTCGCCATTGAAAAAGAGCTGGCCAGCATGAAAGAGGTGGAGGTTTCCATCCCAGCCAAGCTGCATAACTCTCTGATTGGATCCAAAGGCAGCCTGGTGCGCTCCATAATGGAGGATTGTGGAGGTGTTCACATCCACTTCCCTGCGGAGGGATCAGGGCTGGACAGGGTCACCATCAGAGGTCCTGCAGAGGAAGTGGAGAGAGCCAGAAAACAACTGCTGCAGCTGGCGGAGGAGAAGCAAGTCAACAACTTCTCAGTTGAGCTTCAAGCCAAGCCGGAGTACCACAAGTACCTGATTGGCCGAGGAGGAGCTAATATCCGTCGTGTCAGAGATCGAACTGGAGCACGGATCATCTTCCCATCGGCAGACGATCAGGAACAGGAGCACATTACCATCATGGGTAAAGAAGAAGCGGTGATACTCGCCCAGAGAGAGCTGGAAACACTCATCAAAAATCTGGATGATGTGATAGAGGACAGTATGATAGTGGAGCCGCGGCACCATCGTCATTTCGTCTGTCGGAGAGGGCAGGTTTTGAGGGAACTGGCGGAAGAATACGGTGGAGTTGCTGTGAGCTTTCCTCGCACAGGCACACACAGCGACAGCATCACCCTCAAAGGACCCAGAGAGTGTGTGGACGCTGCCAAGAAACGCATTCAGGAGATTGTTTGCGATCTGGAGTCGCAGGTGAGCATGGAGGTGTTGATTCCTCAGCGGTACCACAGAGCCATCATGGGCCCCAAAGGCTGCCGAATACAACAGATCACACGTGAACATGAAGTCCAGATCAAGTTTCCAGACAGAGACGAGTCTGCAGCTCAGGAGCCTACATCTCAAGAGAATGGGGACACCGATCTCACCCCTCGAAAATGCGATATCATCACTGTGACGGGACGAGCTGAAAAGTGTGAATTGGCACGGGCTGCTTTACTTGCTTTAGTTCCTGTGACCATCGATGTTGAGGTTTCCTACGACCTTCATCGTTATATCATAGGACAAAAAGGAAGTGGAATAAGGAAGATGATGGAGGATTATGAGGTGAACATTTGGGTTCCTCAACCTGAGCAGCAGTCAGACATCATAAAGATCACAGGACAGGTGGCCAGTGTGGAGCGAGCCAAACACGGGCTGCTGGACAGAGTCAAAGAGCTGCAGGCCGAGCAGGAAGATCGGGCCTTGCGGAGCTATAAAGTAACGCTCTCGGTGGACCCCAAATATCACCCCAAAATCATCGGTCGCAAAGGAGCCGTCATCTCCCAAATCCGCAAAGAGTACGATGTAAACGTTCAGTTCCCGGACAAGGGTGATGAGCAGCAGGATGTGATCGTGATCTCGGGGTATGAGAGGAATGCTAACGATGCTAAGTCGGCCATCGAGCAGCTGGTGGCCGCGCTGCAGGAGATGGTGAGCGAGGACGTCCGGCTGGACCGGCGGGTTCACGCACGCATCATCGGGGCACGTGGAAAAGCCATCCGCAAAATCATGGAGGAGTTCAAAGTTGATATACGGTTTCCTCAGCCGGGTTCTGAGGACCCAAACAAGGTGACTGTCACAGGACTGCCGGAGAATGTTGACAACACCATTGACCATCTGCTCAACCTGGAAGAAGAATACATGCTGAGCGTCACAGAAACAGAGACTATGGCAGCTTATATGAAGCCTCCTTCAAAGACGATGGGGACTGGAGGAAATGACGAGGACAACAGAGCCCTGGCTAAAGGCTTCGTCGTACGGGACGCCCCCTGGAACGCACAAGGCAACAAGGCACCAGACGTGAGCAGTGCTGAAGAGTTCCCAACGTTTGGATCTGGAATAACACCGAAACAAACGTCAGCGTGGGGACCCAAGAAGTGCTAA

Function

GO:

id name namespace
GO:0005844 polysome cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6822 Predicted to enable mRNA binding activity. Predicted to be part of polysome. Predicted to be active in cytoplasm and nucleus. Is expressed in brain; mesoderm; pectoral fin; and somite. Orthologous to human HDLBP (high density lipoprotein binding protein).

Ensembl:

ensembl_id ENSDART00000178840

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010927 lncRNA upstream 103011 22289980 ~ 22304841 (+) True XLOC_004696
TCONS_00010734 lncRNA upstream 148454 22258962 ~ 22259398 (+) False XLOC_004696
TCONS_00010926 lncRNA upstream 388082 22017946 ~ 22019770 (+) True XLOC_004695
TCONS_00010924 lncRNA upstream 608456 21757817 ~ 21799396 (+) False XLOC_004694
TCONS_00010735 lncRNA downstream 174001 22618388 ~ 22619122 (+) True XLOC_004701
TCONS_00010928 lncRNA downstream 593060 23037447 ~ 23040091 (+) True XLOC_004707
TCONS_00010929 lncRNA downstream 1010042 23454429 ~ 23605722 (+) False XLOC_004711
TCONS_00010930 lncRNA downstream 1010071 23454458 ~ 23605722 (+) False XLOC_004711
TCONS_00010931 lncRNA downstream 1010141 23454528 ~ 23469341 (+) False XLOC_004711
TCONS_00009300 mRNA upstream 103011 22258962 ~ 22304841 (+) False XLOC_004696
TCONS_00009298 mRNA upstream 659844 21697540 ~ 21748008 (+) True XLOC_004693
TCONS_00009297 mRNA upstream 719765 21684239 ~ 21688087 (+) True XLOC_004692
TCONS_00009296 mRNA upstream 858705 21525496 ~ 21549147 (+) True XLOC_004690
TCONS_00009294 mRNA upstream 1085416 21299342 ~ 21322436 (+) False XLOC_004690
TCONS_00009305 mRNA downstream 115680 22560067 ~ 22573297 (+) True XLOC_004698
TCONS_00009306 mRNA downstream 132017 22576404 ~ 22604311 (+) False XLOC_004699
TCONS_00009308 mRNA downstream 136192 22580579 ~ 22599067 (+) False XLOC_004699
TCONS_00009309 mRNA downstream 136240 22580627 ~ 22607887 (+) False XLOC_004699
TCONS_00009310 mRNA downstream 144536 22588923 ~ 22607887 (+) False XLOC_004699
TCONS_00009299 other upstream 613736 21794002 ~ 21794116 (+) True XLOC_004694
TCONS_00009295 other upstream 970394 21437346 ~ 21437458 (+) True XLOC_004691
TCONS_00009286 other upstream 1715839 20691358 ~ 20692013 (+) False XLOC_004688
TCONS_00009270 other upstream 1908772 20498983 ~ 20499080 (+) True XLOC_004679
TCONS_00009250 other upstream 2510925 19877842 ~ 19896927 (+) True XLOC_004671
TCONS_00009307 other downstream 134017 22578404 ~ 22578530 (+) True XLOC_004700
TCONS_00009313 other downstream 213536 22657923 ~ 22661380 (+) False XLOC_004703
TCONS_00009319 other downstream 233566 22677953 ~ 22745783 (+) False XLOC_004704
TCONS_00009330 other downstream 477090 22921477 ~ 22932021 (+) False XLOC_004706
TCONS_00009332 other downstream 665776 23110163 ~ 23110277 (+) True XLOC_004708

Expression Profile

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