RNA id: TU52293


Basic Information

Item Value
RNA id TU52293
length 2494
lncRNA type sense_over
GC content 0.39
exon number 3
gene id AMCG00013068
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 18967429 ~ 18974362 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAGTGCAGACGGGTGCTGTAAGTTTTAGGATTCTAGGTGTTTGTCTAATATCTCTGATTATATTGCAGGAGTATGGAGTTCCCTTCATGGAAACAAGTGCCAAAACTGGGGTCAATGTTGAACTGGCATTCCTTGCTGTTGCAAAggAACTGAAGCACAGAGCGGTACAGCAACCCAACGAGCCCAGATTCCAAATCCACGACTACATTGAGTCTCAGAAGAAGAAGACAAGCTGTTGTGGCTTCATGTAATGGCCACCTCTGCCCAGGAGGACAGCCATGACAGTTGGAttgaagggggtgggggaggttgTTAGAGGAAGATGAGGATTGGGAGGCCAAATAATTGGGAGTGCAATGCCTGACCCCCTTAGTGTGAACTGTTGGATTATGtgccatatttattttgaaagggaTAGGCATGGGGCGAATGTGGAGAGATATTACTAAAGGGTTGTTCTAACCTGTTTTGGTTGtttggaaaacacacacacacacacacacacacacacacaatgtttcaAATCTACTTTCCTTtcaaatatgttatttaattttggttGTATTGATCTTCTGGGAAAATCTGAGATTATTCTTTCACTTATTATTTTCCCTTCATCTGATTAAAGGTGGAAGGTTATTTAATGCTGTGTGCCACTCAGGAAGCGAGGAATACATTTAGCAGTTTGAGCTTTGCAAAATGATCTTCAGCGTCCGACCGAAACTTTGTTGCGGAAACAAGACAGATCTTGGCCATTGGAGCTGCAAGACACAGTGGTCGCTTTGTTTCCCCGGTCTCTGGAAGTGCAACCCCAGCTGGGATTGAAGCACAAACCATGTCTTAAGCACCATATCCCGCACGGCTACGGAGGCTCACTGTAAAGCCCTCTTTAGCATGGTATCAAACTGTAAGAAAGTCCAAAGACTTATTTCAAAACCATTCCGCCAAAGACTTACTGCAGTCAGTGAGCATCGGTTCCAGTAAGCAATCCCGCATTTTGCATTCATTCTAAAACCCACCCAAACCGCAAAGTCTTCACACCACAGAGAATTTGGCAGACATCTAGAACACTTTTACACCTTTTGTTGTGACTAGTCCCTTCAGTTGACACTAGCCAGACATACCCTAAAGCTTTACAAATATTGGAGTATTTCACATTTGGATTTGATAATTGATTCCAAGCCGCAGAATGGACTACTGCAGAAGAGTGTGGGGTGGGCGATGTATGTGGCATAATTGCAAATTGGAAatcatgtgtattttgttctaATGATAATCTGAGTCACTACTGACGACTTAAGCTTTAATGACCGTGTTCTCAGAGGGATTCGGGATGCAGCCTATTCATCTGGACAGTGTTGGTTTGAGGTGTGTACGTTTCTGAAGTCATTGCTCATTACTATGATACTCCAGTGTTTAATGTATTACgtttaaagtatattcatcTGGTTTCAAAGTTTCAACTGGGCTCacagaagtaaaaaataaatgacattgttGTAATGCTGTCttaagtgagagagagagagagagatgactgACAATACTTGGAGAAAGCATAAAGGACGTTCTGTATTTTGTGCACAGCCTTCGTCTAAGTAGTCAGTGTTTCATGGGTTAATTATTGTTTGATATTTAATCTATGTTGATTTAAAGTAAGTCTTTGGATACCTCAAAGATCTtagaaaaatgattttatttatataattgtctgtgtgtgcatatgtacgtgtgtatatacacatatatttatatgtacttTAATTGCTAAACAATGTGTAAATTTAATGCAATGAAGAAAAactgttgtttcttttaaatggcAAAAGCAAACCTCTTGTCTCTCATTTTACTGCATTACAAGATGAGCGTCATAAGAACCACAGCAACTGACCCTGAAGATTCATATCGATCTTTTAAACCTTGGAAAATGGTGCCGTTCTTTCTCATCTCTGTCCTTGTTAACTGTGTATTCTATGGGAAACAAAGATGAACCTTTCTTTATTCTTTGGTCACCAGAAGGAATACATCTGAAAATCATCCCTTGTGTATttctgaccccccccccccaaaaaaagaaaaaaaaaatgaaaaaagaatataaaggtgaaataaattatgaaaatagcACTTGggggaggaaataaaaNNNAAATCCtccaataaaaatatttttcaagttGAACTAGCATGAAAATAAGCTTGCAGGTTTGACAACCAATCAAAATCTGAGGTCCTTCTTACTGTTTTTGCATTGACTTTGATAGACTCCTTGCATTGTGTTAAGCACTCCTTTTAGGAAGTGGCCTTCAGATGCTGTCCGATGGGTTATTACTGCCTTTTGTTCCGGTTTGTTTTGGAATGTTGCTTGCTTGCtggttcagtttttgtttggttggtgtCTTCTTTGGTTCCTTTCTATGCAGTATTGGATGTCAATGGAGTATTATGAGAAAATGATTTATAATCGTATAAACAtctctattttttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52244 lncRNA upstream 272279 18696820 ~ 18697632 (+) True G41924
TU52226 lncRNA upstream 309389 18660254 ~ 18660522 (+) True G41908
TU52117 lncRNA upstream 670997 18298625 ~ 18298914 (+) True G41823
TU52116 lncRNA upstream 673965 18295645 ~ 18295946 (+) True G41822
TU52115 lncRNA upstream 685056 18283628 ~ 18284855 (+) True G41821
TU52321 lncRNA downstream 92611 19066973 ~ 19068210 (+) True G41990
TU52389 lncRNA downstream 612166 19586528 ~ 19586793 (+) True G42054
TU52418 lncRNA downstream 1011816 19986178 ~ 19987860 (+) True G42077
TU52478 lncRNA downstream 1413322 20387684 ~ 20392609 (+) True G42127
TU52537 lncRNA downstream 1576898 20551260 ~ 20551817 (+) True G42172
AMCG00013064 mRNA upstream 277160 18691996 ~ 18692751 (+) True AMCG00013064
AMCG00013058 mRNA upstream 410630 18553253 ~ 18559281 (+) True AMCG00013058
AMCG00013062 mRNA upstream 456051 18512572 ~ 18513860 (+) True AMCG00013062
AMCG00013060 mRNA upstream 464939 18478697 ~ 18504972 (+) True AMCG00013060
AMCG00013059 mRNA upstream 498322 18462591 ~ 18471589 (+) True AMCG00013059
AMCG00013073 mRNA downstream 74122 19048484 ~ 19064539 (+) True AMCG00013073
AMCG00013074 mRNA downstream 97874 19072236 ~ 19077701 (+) True AMCG00013074
AMCG00013076 mRNA downstream 1006178 19980540 ~ 19982853 (+) True AMCG00013076
AMCG00013081 mRNA downstream 1033255 20007617 ~ 20007958 (+) True AMCG00013081
AMCG00013079 mRNA downstream 1059855 20034217 ~ 20080006 (+) True AMCG00013079
TU51470 other upstream 3339284 15620785 ~ 15630627 (+) False AMCG00012982
TU51437 other upstream 3490545 15477179 ~ 15479366 (+) True G41264
TU51320 other upstream 3833182 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 4336498 14632357 ~ 14633413 (+) True G41059
TU51114 other upstream 4440105 14528162 ~ 14529806 (+) False AMCG00012940
TU52302 other downstream 51199 19025561 ~ 19029278 (+) True G41978
TU52747 other downstream 2295313 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 2396481 21370843 ~ 21418787 (+) True AMCG00013126
TU52772 other downstream 2452298 21426660 ~ 21486808 (+) True G42344
TU52771 other downstream 2510545 21484907 ~ 21486808 (+) False G42344

Expression Profile