RNA id: TU52331


Basic Information

Item Value
RNA id TU52331
length 1980
RNA type TUCP
GC content 0.38
exon number 4
gene id AMCG00013070
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 19068245 ~ 19071418 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAGGTCGAAGTTCACAGAATCTTCAAAGATGGCGGCGCTCAcgtccttgtttttgaaatccAGATCGGGACTGCTGCTTTCGTGCCAGCCCTTTGCCACACCTGCAAGATGTGCATCCAAAAAGGCTGGCGGTACCTCGAAAAACAGCGGAGGAAAAAGTGCTGGTCGCAGATATGGATTCAAGAAACAAGAAGggaATGTTGTTCATGCTGGAAACATCTTGGCAACACAGCGTGTAATGCGCTGGCAACCAGGAGCAAATGTTGGAATTGGTCGCAACAACACTCTGTATGCGCTGGAAGATGGCACTGTCAGGTTCACCAAGGAGGTCTTCATTCCCCCGCCTCGCAGTGTTCAGGCCAGAAATGTGATCTGCAGACTGCCCAAAGGGACTCTGCTCTACAAGACATTCATCAACGTTATCCCTCCCAAACAGGAGGGCATATTTAAACTTGTGGGCATGTTGTGATGCCCTCTTCTGCCCCTCCGTTTCTCTGTCTGGCACATTCTGAACTCCATAGAAAGACTTGCAGGCCCTGAGTTGATGATGTCGAATGAGTCTTTCCACTGCCCACCTATTCCAAATTAATAAGGaggatgtatattaaaaaatcagGTATACATTCATTATCCAGATACATTTCCTTTctcagttgtatttatttatgtatgaaacACACTATAGATATATGCATGATACAATTTACTTGAATTGTCTAATAAACCTGTTTGTTACAGTCTCAACTGATGTCATCTAAATGCTCGTGCTGCATTGATATTGTTCAGCTTTTTTGGCTAAGCATATAACGTCCGGACAGAGacttcatatttaatatgtatattaattaaatatacctTTTTCCAATATAGCACTTCATCAGAGGAGGACTTTTTCCAACTTTATATTCTTAAgtaccagtttttttttcccctggtttgcagtcataaataaataattattctaaaGATTCAGTGAGTTTCATAAACTGTCCATATTAAGTTCTAAAATAATCTTGTGTAAAATTCCAGCAGAAATCTTATTTctgattaagaaattaaataaacatttaatttgaaaatgtttattaataattttgcatttattatgatCCATGTATTGTATAAGAATGTGAGttggtatttaattcaaaatcatGCTTGAATAGGTCTAATTAGTCACATTGAATTgtctaattttatttaaaaatatctgaatCTTACAATGTAACATCTCAGTGGCCTGATTAGGACAACTTCAAGGAAAATTGTCCACTGTTGCAAATGACCAGCCTGATTGCCCATGATGTTGATTTACAcggtgatgtaatttgtttttttgtttctttaatccTCAATCTAATCAAGTGCACAGTGCACAGAGACGTCCTCGCTCGTTTAAAAATGTTGATGTCTAAAGCTTCAATTGCTTCAGTACCCATGAAGTTACAGGTTCGTCTTCCCTTTCGTATGTAGATTTTAGCTGTTCCCAGAGTTTTTGTCTTGTGCAGTTccaattataatttgtattaagcCCCCTGCATTTTATTCTTTAGAGAAATTAAGCTTTGCGGTATGAAACGGCCTGCTAAGTCTTTGTTCTAAAATGTCTTTTACACCCTCCTGTGCAGAGTGTAGGGTCCCAGTGCATCTTGGGAATTCTGGAAACTTGCCTTTCAAGATTGGAAAGTCATGACAAAGAGAGGGTAGGAAAGTGTTTTAAGAAAGTGAAGTAAAAACCACTGCAGTTATCATGAAAGATTCCTGGATATTTATCCCAGAAGGAGTCTAGGAACCTTGACAACGGCACTAGTGTTGGGAGATCTTTTGAACAGAGAATCTGTACTGCTGTAGTAGAAATTATACTATCAGAGCTTACTCTTAGAACAAGCTCATTCACTCCAACTGAGTAAACGAATCAATCTAGGCTTACAAACCATTGATCTCTCATGTGGAAaggattgtttttgtgtgagtgagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52245 lncRNA downstream 370638 18696820 ~ 18697607 (-) True G41925
TU52242 lncRNA downstream 407723 18660254 ~ 18660522 (-) True G41922
TU52190 lncRNA downstream 634528 18429054 ~ 18433717 (-) True G41875
TU52158 lncRNA downstream 682039 18332841 ~ 18386206 (-) False G41858
TU52391 lncRNA upstream 613018 19684436 ~ 19684658 (-) True G42056
TU52393 lncRNA upstream 705106 19776524 ~ 19776729 (-) True G42058
TU52419 lncRNA upstream 914825 19986243 ~ 19987735 (-) True G42078
TU52493 lncRNA upstream 1330290 20401708 ~ 20405085 (-) True G42136
TU52621 lncRNA upstream 1594927 20666345 ~ 20674228 (-) True G42242
AMCG00013069 mRNA downstream 22199 19025572 ~ 19046046 (-) True AMCG00013069
AMCG00013071 mRNA downstream 62985 18978443 ~ 19005260 (-) False AMCG00013071
AMCG00013072 mRNA downstream 103910 18963859 ~ 18964335 (-) True AMCG00013072
AMCG00013067 mRNA downstream 141857 18918564 ~ 18926388 (-) True AMCG00013067
AMCG00013066 mRNA downstream 248080 18805012 ~ 18820165 (-) True AMCG00013066
AMCG00013075 mRNA upstream 9318 19080736 ~ 19209004 (-) True AMCG00013075
AMCG00013078 mRNA upstream 140425 19211843 ~ 19390121 (-) True AMCG00013078
AMCG00013077 mRNA upstream 892112 19963530 ~ 19978155 (-) True AMCG00013077
AMCG00013080 mRNA upstream 917443 19988861 ~ 20005821 (-) True AMCG00013080
AMCG00013083 mRNA upstream 1297728 20369146 ~ 20372204 (-) True AMCG00013083
TU52316 other downstream 45467 18977060 ~ 19022778 (-) False AMCG00013071
TU52315 other downstream 69479 18977060 ~ 18998766 (-) True AMCG00013071
TU52133 other downstream 824152 18242750 ~ 18244093 (-) True G41836
TU52091 other downstream 876723 18176061 ~ 18191522 (-) True G41807
TU52041 other downstream 1024658 17954063 ~ 18043587 (-) False AMCG00013042
TU52412 other upstream 908918 19980336 ~ 19982880 (-) True G42076
TU52536 other upstream 1459776 20531194 ~ 20545811 (-) True AMCG00013090
TU52810 other upstream 2180689 21252107 ~ 21301421 (-) True G42366
TU52828 other upstream 2234768 21306186 ~ 21307693 (-) False AMCG00013112
TU52819 other upstream 2264799 21336217 ~ 21517177 (-) True G42371

Expression Profile