RNA id: AMCG00013073


Basic Information

Item Value
RNA id AMCG00013073
length 3623
RNA type mRNA
GC content 0.46
exon number 4
gene id AMCG00013073
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 19048484 ~ 19064539 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAAACCTGTGCCAGCGGAGATCTCTGCGGATGCGCGGCTTCATCACAGAGCAAGGGGGGTTCACATTACATAGTAGTTAATGACTATATCCCAACTGCCAAAGTGCCGTGCAGTCCTGCAGGGACGAGCCAGCTGTAGTACTCGGTTTATAACTTTGCAAAGGTAACCGATTGCAAGTTGTTAATGTTTTGCGTTCAAAGGGAGAGACCTTTGTTCAGCCGGACGGCAGTGAAAGTTAGCCTCTGCTATTTGACGACTgaaggagaaacacacacacaaagaccgCACTCGTTTCTCTCAGAGGGTCTGCCTGTGCCTAGTGGGCGCACACTTAGCGTGGCCCTGCCGGTGTTAAACAGGGGCAGCGCTGCAgggtattgtattattaaacgTCACAGGACGCTGCTGCCGGGACGGACGGACGGGAGCAGCCCCGGACTGCAGCTCCAGGCGTGCGGCGATGGCGCGGCCCCGGGTGTCCGGCTGGCTGTGAGGGGCAGCCCGGGCCGAGCCGGCCGTCTCCACTGAGCGACGCACGCAGTCAGATGGCAGACCCTACGCCCGAAATGCGCTCCAACACCAGCACTACAACACCCCCTTCGCTGACATCGGACCAGCTCACGGTCATCGTGGCTTCAGTGTCCTGCATGGTGTTTTTTGTGATTATCTTGGTGCTGCTGACAATACTCTACCGCAAGGATCCACTCTGCTGCAAAGTCAGGTCTTATCAGGACGCGCACCAGTATCCGCAAGGACAGATGTTCTTCATCGGGCCCCCTGGCAGCTACCGTCTGCCTCCCCTAGACGCCCCCCTCCCTCACCTGCCCTCCTACGAGAGTGTGCGCAAGAAGGACCGGCAGCGGCAGATCCACATGATGATCGCAGACAGATTTGGCCTCAACCCCCCAGCCCTGACCGAGCCACCACCGACGTACGAAGAGTCCATTCGGCATTCTGTGGAAATCCCGGCTGTCTTTGATGTTTCAGATGCCTCCTTGCCCCCAGTTGTTCACTCCCATTCTGGAGCCGACACCAGTGTGTCACAGGAGGGGCCCACACATTGCCACACTACTCCGGCCCCCTTGGCGAACTGTCCGTCTGACTAGAGCAGAGTCCTGCCAGCCACCAGCGCTCCTTGCTGCCCCCTGCAGGTTCAGAGGGAGAGCGACATTGACTCACGATCAGCGTCCTTAGAGTTCATtagaacaatgtttaaatacaattaaatcaaattcacaCAGATTGTGCTACAGGGACCAGGATATCTATCCTTTGCTGTAGCCCAGTGTCTCAAGGAATCATACAGTGCTATTAAATGCAATAATCAGTCAAATGAAACTCAGCAGGGATGAGGAAAAACTAGTCCCTTAACCCGAGATTAGAACATGGCAGGGACCAGAGCAGTGGAGCGCAAGCTTTCAAAGATAAACACCTATTGTCAGTATCTTTGTCAATACCATGGCTCAGCATAAGTAACTCTTTTAATCAGCAGTGTTTGTTTAAAGGTGTGTTGGTGCACCCCCAAAGAATCTCCGCTTCCTCCACAGTTAAATGAGGTCAGATGACCAACTTCAAAGGAATGCAGAGGGAGACGGACCACACTATCAATGTTTAATCTTAGAAGGAAGAGCACACAGGCTGATAGTGTATTTCATGCCAAAGGAATTCTTTTCAATTCATCCAATTCCATCTGCAGGACTGTGCTTTCTATATCAGCTGCAACCAAATAGATAATCCTTAACCAGAATGGAATTACAccctgatatttttttaaagaagcatcTTGAGTCTAATCATTCTAATATGTAGTCTAGTCTTCTCTACACTACCATGTTTGTAGTGGGAAGGAAGCCAGGCAGTCCAAAATTGACAAGTGTAAGATTGAACCCAGTATGCCACCTAATCTGTCCCTGAATGTACTCTGAGTAGAGGCCGTATAAACATGCCTTCACAACTGATGTCTTTGGCAATCACTTTCTGGCTTTCCAAAAAATATCCCAATTGATCTGCAGTCAAACCTCCCTCGTTGGTTTCAGGGTCGGAGACAGATTTGATTTTGACCTTTGAGGATTTGAAGTAACAATTGCTGCTGTTAAAAGTCACATGCTGTTGACCACGGATGCTGAACTAACAGAAACCAATCTTAACACTGGCATTTCAGGCCGCTGAGACCCAGACCAATCTGCAGTCGGTTTCagcattaaaaagacaatggcTCAGGGCAGACATAGTGCGGGTTTGTGACGCAGACAGCAACATGCCAAGCTGCAGTTCTTGGCAAAAACAAATACCCTTATCTAACACGTATCAATTAACTTTTCAAagaattttgttttggttaactGTAATACTGATAGAACAACTGAGCCCCTACCACCCCCATCTCATGTACGGTTCTGCTCTTAGTCAGGACTCTTAATCACGCATTGCCTATCTTGCCATTTTCACCAGCCAGTCGAAGGCATTCAATTAACTGAACTTGCACACCAGTTAATCGTCTTCAGAACTTTCCAAAGGAAGCTTCGGTTACTCCTGCAAGTCCTGAATCAGATCctcttgtgtgtctgtcccaTGCTTTTGGAGCCCTTAAAACAAAGGCTGTTCTCAACCATTGCAATGGAGAAATCCACGGCTTAGAAGATGAAGTCCTTTGTAGCCACCAGTAAATCAGGGCTTGTGCTTCCCTTGTGGATGAACCATAATGACAAAAATGCACAACAGGGATGTGACCAATTATGAGATGGACCCTGGGATAACAGAACCGAGACTCTAAGAGGAATCCTGGAAAGCCTCCTATACTTAATTCTCACATTCTCACCAGTCTggcataaaataaatgcaatcaatAAAAAGGCAATGTTAAAGGGGTTCGATCAGTTTAAATCTGCACAATACCTAGCAAATGAGTGAGCAGTCCAAGGTCTATAGACTTCAGCCACATGCGGAACAAGCATAGTTTTAAAAGTCTTGATACGTTGAACTATTTGATGTTTTTGCATGGGTAGGaatttcaacaacaacaactttctGATTTGTGTACCTCTGTTTCACCCACTGCttacattttggttttaaatgttgcatATAAAGTATTTGACTAAATAATCAGTGAAAGGGAAGAAACTGAAGCTAAGTACTACAGATGAGTGCAGGCACATGATACGATGCATCGAGTGATGAATGTGGAGAAACGAAACATGGGTGTCGGGGGTTTGCTTTCGAAACCCGTACAATACACAAGCATTGCCAGGTTTTTGCTAGCTGTGATCTTCGCACATTTCGGTTTTAGGAGGAAATGTGtgggttatttttatattgcactACTGATTTGGCATTCCCGAGCCTTAACATTTGATACATAGTCACTCCAGCTGACACTTGATAGCAGGGAAACTTGTTGCATTGCACAGGAAAAAGTGAATCGCAGTTCTTTCCTGTTTTCAGAGCTTGACGATGAAGATGAATTGCATGTATGCCTACTACTGAACACTAAAAATTGTATCTGTCCTTCATTTCATAACTAGGTATCACAGACTATGTAATTTGAAGGAcaccatgtttttaaatgtaattttcacaCTTTGGAATGtaaaaatatctgtaaataaagTGATTTTGTGTA

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52293 lncRNA upstream 74122 18969911 ~ 18974362 (+) True AMCG00013068
TU52295 lncRNA upstream 74122 18969911 ~ 18974362 (+) False AMCG00013068
TU52294 lncRNA upstream 75463 18969911 ~ 18973021 (+) False AMCG00013068
TU52244 lncRNA upstream 350852 18696820 ~ 18697632 (+) True G41924
TU52226 lncRNA upstream 387962 18660254 ~ 18660522 (+) True G41908
TU52321 lncRNA downstream 2434 19066973 ~ 19068210 (+) True G41990
TU52389 lncRNA downstream 521989 19586528 ~ 19586793 (+) True G42054
TU52418 lncRNA downstream 921639 19986178 ~ 19987860 (+) True G42077
TU52478 lncRNA downstream 1323145 20387684 ~ 20392609 (+) True G42127
TU52537 lncRNA downstream 1486721 20551260 ~ 20551817 (+) True G42172
AMCG00013068 mRNA upstream 77416 18967429 ~ 18971068 (+) False AMCG00013068
AMCG00013064 mRNA upstream 355733 18691996 ~ 18692751 (+) True AMCG00013064
AMCG00013058 mRNA upstream 489203 18553253 ~ 18559281 (+) True AMCG00013058
AMCG00013062 mRNA upstream 534624 18512572 ~ 18513860 (+) True AMCG00013062
AMCG00013060 mRNA upstream 543512 18478697 ~ 18504972 (+) True AMCG00013060
AMCG00013074 mRNA downstream 7697 19072236 ~ 19077701 (+) True AMCG00013074
AMCG00013076 mRNA downstream 916001 19980540 ~ 19982853 (+) True AMCG00013076
AMCG00013081 mRNA downstream 943078 20007617 ~ 20007958 (+) True AMCG00013081
AMCG00013079 mRNA downstream 969678 20034217 ~ 20080006 (+) True AMCG00013079
AMCG00013082 mRNA downstream 1193121 20257660 ~ 20258634 (+) True AMCG00013082
TU52302 other upstream 19206 19025561 ~ 19029278 (+) True G41978
TU51470 other upstream 3417857 15620785 ~ 15630627 (+) False AMCG00012982
TU51437 other upstream 3569118 15477179 ~ 15479366 (+) True G41264
TU51320 other upstream 3911755 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 4415071 14632357 ~ 14633413 (+) True G41059
TU52747 other downstream 2205136 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 2306304 21370843 ~ 21418787 (+) True AMCG00013126
TU52772 other downstream 2362121 21426660 ~ 21486808 (+) True G42344
TU52771 other downstream 2420368 21484907 ~ 21486808 (+) False G42344
TU52773 other downstream 2420782 21485321 ~ 21486808 (+) False G42344

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00052246 True 3579 mRNA 0.46 5 NC_007114.7 60146309 ~ 60175470 (-)