RNA id: AMCG00013074


Basic Information

Item Value
RNA id AMCG00013074
length 1791
RNA type mRNA
GC content 0.61
exon number 8
gene id AMCG00013074
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 19072236 ~ 19077701 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAGGGAGCAGGCTTAACCCTGACGGCAACTCAGACTCCGACAGTGACTCCGAGGACCTGCCTGTGTACGGCTTCCTGCAGTCACGGCCTGCCCCTGGAGGCAGGACCGGCCACCACAACAGCCAACGGGCCGACCTGGTTGTCCTCGACAGCTCGGACTCTGAGGCCGCTGGCCCGCCGCCCGCTGCCTGCGCCGCTCTGCCTCGTGCTATGGCCCACGACGTCACCATGATCAGCAGCGACAGTGAGGAGGAGGCAGTGTACATGCCTCTGCTGGAGAGACTGAAGGGGCGTTTAGGAGCGCCCAGCACGTCTCAATCTGCCGCCAGCTCCGTCCAGCCCAAGCAGGATCCCGTGAGCGGCCCTGAAAAGGCAAAGCAGCCTCTGAAAGCCGTGGTGCCAAATCTCCCCACATTACCCCAGACAGAGCAACATGACAGTGCCCTCAGACAGGCCTCCGTCTGGGACTTCTCCGACTCGGAGGGGGAGAACGAGGCTCCGTGCTCCAAGGACAGTCGCAGTGACCTGGGCTCCCTCACATCCCAAAAACCATGCCTTCCCACATGTCCGGAAATCGGGGACCATGGCTTTTCGCCATCCAGGAAGAAAACGGCCAAGCGCAGGCAAGCGCCGGTGGAGGCAGCAAGGGAGGATGTTCTGGACGGGAGGGGAGACAGGGAGCGGCAGAAGGCCGAGAGGGAGAGCCGCAAACAGGAACTGGAGAGGCAGAAGGCCGAGAGGAAGGCCTTGGCTGACGCGGTGAAAGCCCTGCGGCCTGAGGAGTGCATCAAGCACATGGTGGTCACTATCGACCCAGGCAGtgcaGCGCTCCTGCAGTTAGAAGGGGGCGGGGATCTGCTGAGCTCCCTCCAGGTGCTGGGCTGCAGCTGTGCCATCGAGAAACAGAGCGTGCCCCGTAGTGTCACCTGGGCAAGGAGACTCCCCAACTCACAGGGTGGAGAGTCGCGGAGAGTCCTGGAAGCTCACGTAGTGATCCAAGTGCCGGTGGAAGACTTCGTCCACATGGTCCACAGCTACAGCCAGGCCCAGAGAGGAGCGTGCTCAGACAGCGGGCCCACTCTTTTCTCATGGACACGCAGCGTTGTGGAGGACAGCCCAGGCCGAAGCCCTTCCCTGGCTGTGATTGACCTGGAGAGATACTTCAGGTCCCAGAAGTCTCAGAGCCAAAAGAAGTACCGTGAGGCGGTTCTGGGAGAAGGACAGAAGGAAGGGGCCCGTAAacgaaagaaaagaaaagaagagggCGAACAGCTGCCGGAGATATCCCGAGTAGATGTAGAAGAGGCACTGGTTGACCTGCAGCTGCACACTGACGTCCAAGTCTCCTTCCTGGCCACCTGGAAAGATTTCTCTGAATACATTGCTATGTCAACCAAAGCAGTAGCAGAGGCACCATTTAAGAGAGAGCGGGATCAGACGAGCTTTAGCTTCTACCTCGAGAGCGAGTGGTCTGGAGGGCACAAGGTGGAGCGCAGTGGGAAGGGGCTCGTTCAGGTGTGGAAGCGGCAGATCCAGCAGCTGAACCGAGTCAGCCCCGACATGGCCAGCGCCATCCTGGCCGCGTACCCGTCTCCACAGCTGCTGGCGAAGGCATATCGGAAGTGCAGCTCAGACCGTGAGAAGCAAAACCTCCTGTCAGAGATTCTGATTCGCCGAGGGGAGGGCGTGACCTCCACCTCCCGCCGGGTTGGCCCAGAGCTCTCCAAGCGCGTGTGCTTACTGATGACGTCATTGGACCCTGACCTGTCTCTGGAATCCACGGGCTGA

Function

GO: NA

KEGG:

id description
K10882 EME1, MMS4; crossover junction endonuclease EME1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52321 lncRNA upstream 4026 19066973 ~ 19068210 (+) True G41990
TU52293 lncRNA upstream 97874 18969911 ~ 18974362 (+) True AMCG00013068
TU52295 lncRNA upstream 97874 18969911 ~ 18974362 (+) False AMCG00013068
TU52294 lncRNA upstream 99215 18969911 ~ 18973021 (+) False AMCG00013068
TU52244 lncRNA upstream 374604 18696820 ~ 18697632 (+) True G41924
TU52389 lncRNA downstream 508827 19586528 ~ 19586793 (+) True G42054
TU52418 lncRNA downstream 908477 19986178 ~ 19987860 (+) True G42077
TU52478 lncRNA downstream 1309983 20387684 ~ 20392609 (+) True G42127
TU52537 lncRNA downstream 1473559 20551260 ~ 20551817 (+) True G42172
TU52549 lncRNA downstream 1549393 20627094 ~ 20627334 (+) True G42177
AMCG00013073 mRNA upstream 7697 19048484 ~ 19064539 (+) True AMCG00013073
AMCG00013068 mRNA upstream 101168 18967429 ~ 18971068 (+) False AMCG00013068
AMCG00013064 mRNA upstream 379485 18691996 ~ 18692751 (+) True AMCG00013064
AMCG00013058 mRNA upstream 512955 18553253 ~ 18559281 (+) True AMCG00013058
AMCG00013062 mRNA upstream 558376 18512572 ~ 18513860 (+) True AMCG00013062
AMCG00013076 mRNA downstream 902839 19980540 ~ 19982853 (+) True AMCG00013076
AMCG00013081 mRNA downstream 929916 20007617 ~ 20007958 (+) True AMCG00013081
AMCG00013079 mRNA downstream 956516 20034217 ~ 20080006 (+) True AMCG00013079
AMCG00013082 mRNA downstream 1179959 20257660 ~ 20258634 (+) True AMCG00013082
AMCG00013088 mRNA downstream 1320908 20398609 ~ 20403101 (+) True AMCG00013088
TU52302 other upstream 42958 19025561 ~ 19029278 (+) True G41978
TU51470 other upstream 3441609 15620785 ~ 15630627 (+) False AMCG00012982
TU51437 other upstream 3592870 15477179 ~ 15479366 (+) True G41264
TU51320 other upstream 3935507 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 4438823 14632357 ~ 14633413 (+) True G41059
TU52747 other downstream 2191974 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 2293142 21370843 ~ 21418787 (+) True AMCG00013126
TU52772 other downstream 2348959 21426660 ~ 21486808 (+) True G42344
TU52771 other downstream 2407206 21484907 ~ 21486808 (+) False G42344
TU52773 other downstream 2407620 21485321 ~ 21486808 (+) False G42344

Expression Profile