RNA id: AMCG00013076


Basic Information

Item Value
RNA id AMCG00013076
length 839
RNA type mRNA
GC content 0.51
exon number 5
gene id AMCG00013076
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 19980540 ~ 19982853 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGGCATTACATAACCCGCCGGCCCCGTCTCCCTGCCCGGATACAAACGAGTCGCAGGCCGGCTGGCTGCCTCGGAGACTCTCCGTCTGCGCAATGGGGGTGGGGGCGTTATTCAGACCACGATTTCCAAGTGTTCCTCCGGGGCAACTCGAAATCACCATGGCCGAGGAGCGCACCTTCATCGCGGTCAAGCCCGACGGCGTGCAGAGAGGCCTTGTTGGAGAAATCATCAAGCGTTTTGAGCAGAAAGGCTTCAAACTCGTGGCAATGAAAATGCTGCACGCATCTGAAGATCTCTTGAAACAGCACTACATTGACCTGAAGGACAGACCATTCTACGCTGGACTGGTCAAGTACATGAACTCTGGACCTGTTGTTGCCATGGTGTGGGAAGGCCTTAAAGTAGTGAAGACTGGCAGAGTAATGCTGGGCGAGACTGACCCCGCTGCTTCAAAGCCTGGCACCATCCGCGGTGATTTCTGCATTCAGGTTGGAAGAAACATCATTCACGGCAGTGACTCTGTGGAAAGCGCCAACACCGAGATCAGCCTGTGGTTCAAACCCGAGGAGTTGGTTTCCTACAAGAGCCCTGCTCACGACTGGATCTACGAATAAATCTCTAGTTTAGCGGTTTCCTCACCCTCCCTGCCTGTCCTCTTTCCTTCTGTGTCCTTTCATTCCAGTGGATGTAGACCTGGGAGCAAAGTTTGTACTGTCAGTCTTCTGAATGCAAAGCacttaataaaatgataaaacccAGTCTGAGTTCCATTGTTACTCATTCAAGACTAATCTTaagttacatttttacacaGTTGGATGTTTAAACATGTTGACTT

Function

GO:

id name namespace
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0006183 GTP biosynthetic process biological_process
GO:0006228 UTP biosynthetic process biological_process
GO:0006241 CTP biosynthetic process biological_process
GO:0005524 ATP binding molecular_function
GO:0004550 nucleoside diphosphate kinase activity molecular_function

KEGG:

id description
K00940 ndk, NME; nucleoside-diphosphate kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52389 lncRNA upstream 393747 19586528 ~ 19586793 (+) True G42054
TU52321 lncRNA upstream 912330 19066973 ~ 19068210 (+) True G41990
TU52293 lncRNA upstream 1006178 18969911 ~ 18974362 (+) True AMCG00013068
TU52295 lncRNA upstream 1006178 18969911 ~ 18974362 (+) False AMCG00013068
TU52294 lncRNA upstream 1007519 18969911 ~ 18973021 (+) False AMCG00013068
TU52418 lncRNA downstream 3325 19986178 ~ 19987860 (+) True G42077
TU52478 lncRNA downstream 404831 20387684 ~ 20392609 (+) True G42127
TU52537 lncRNA downstream 568407 20551260 ~ 20551817 (+) True G42172
TU52549 lncRNA downstream 644241 20627094 ~ 20627334 (+) True G42177
TU52658 lncRNA downstream 856736 20839589 ~ 20840560 (+) True G42269
AMCG00013074 mRNA upstream 902839 19072236 ~ 19077701 (+) True AMCG00013074
AMCG00013073 mRNA upstream 916001 19048484 ~ 19064539 (+) True AMCG00013073
AMCG00013068 mRNA upstream 1009472 18967429 ~ 18971068 (+) False AMCG00013068
AMCG00013064 mRNA upstream 1287789 18691996 ~ 18692751 (+) True AMCG00013064
AMCG00013058 mRNA upstream 1421259 18553253 ~ 18559281 (+) True AMCG00013058
AMCG00013081 mRNA downstream 24764 20007617 ~ 20007958 (+) True AMCG00013081
AMCG00013079 mRNA downstream 51364 20034217 ~ 20080006 (+) True AMCG00013079
AMCG00013082 mRNA downstream 274807 20257660 ~ 20258634 (+) True AMCG00013082
AMCG00013088 mRNA downstream 415756 20398609 ~ 20403101 (+) True AMCG00013088
AMCG00013087 mRNA downstream 502170 20485023 ~ 20502341 (+) True AMCG00013087
TU52302 other upstream 951262 19025561 ~ 19029278 (+) True G41978
TU51470 other upstream 4349913 15620785 ~ 15630627 (+) False AMCG00012982
TU51437 other upstream 4501174 15477179 ~ 15479366 (+) True G41264
TU51320 other upstream 4843811 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 5347127 14632357 ~ 14633413 (+) True G41059
TU52747 other downstream 1286822 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 1387990 21370843 ~ 21418787 (+) True AMCG00013126
TU52772 other downstream 1443807 21426660 ~ 21486808 (+) True G42344
TU52771 other downstream 1502054 21484907 ~ 21486808 (+) False G42344
TU52773 other downstream 1502468 21485321 ~ 21486808 (+) False G42344

Expression Profile