RNA id: AMCG00013077


Basic Information

Item Value
RNA id AMCG00013077
length 2145
RNA type mRNA
GC content 0.45
exon number 14
gene id AMCG00013077
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 19963530 ~ 19978155 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGAAATGTCACTAAAATAGTCTACATTTTCACAAACTATTTTCTAAAGTAATGCAttatgatatatgtattttacaactTTCATCGGTAATTTtactcccccacacacacggAATGGCCATCAGAGTTGAAAGGTTACGTTACCGGAAGTTCGTATTTTCTCCATGTGGGGGAAATGTGTTTGCGTTTCATGTGTGTTAACAACACGTTTTGTGCAATTTAACGCTATTAAAATCGATTTTCACTAGTAGTACAACATTCgcttttaacattgttttaggACTTTACGTGGAATATTGGGTTGAGAAGCTACTAGTGCCAAATCCCAGTTAGTTTGAGGCAGTTGGTCTCTCGATCTTTTCGATTTCTCAGTATTTCactaaaactgttttaattagtattattgaaacatatttaataGTATGGATAAGACCGACAAGAAATCCCCGAAAGCGAAGAAAAGGACAGTGGACCTTAACAGCCCCGAGGCAGAAGGCGGTCAGTTTCGACGAGAAGAAGCCAAAAGACTGAAGCACCTCCGCAGGGTGACCGTCCTGGGCGAGAAGGAGGAGGCCGAGAAGTTGCTGGAGGAGCTGGTTTTCGGTGCCGAGGACGACCTGGTGGAGAAACTCAAAGGGACAGCGGAGACAGGTACTGCTGTGAGTGGTAACCTGCTGGATGATGACTCCAGCGATTCGGAGGTGGAGAATGAAGCCCGGCTGCAAGTCAGACCTCCTCGGAAGGCAGCCTGGGAGGATGAGGATGACCAACTGGAGGAAGATGTGGACATGACTCACAGGTTCCGGAGAGAGTTTGTAAAGAGCGACGCGGAGAAGAAGCTTCCAAAGCAGAAGCTGCAACAGAGGCTGAGAGACCAATTCCAGCGAGCTATGGGAGGCACACCATCATGGGCAGAGAAAAGcttgaaaaagaagaaagataaGAAACGTGGAAAAGATGttgacagtcaagatgatgatgatgatgatgatgatgaagacaATCTAATGCACAAGACTGGCAACTTTGTAGCCTCTTCAGAGTCTCTCCCTAAAGGAATCATACAGATGAAGAACTGCTTGAATGCCAACAATGACCGGACGTCAGATGCCAGGCTGACGACGGTTCAGTTCCATCCCTCAGCCCAGGTTGTGATGACGGCAGGAGTAGATCAGTCCATTTCCATCTTCCAGGTTGACGGGAAGACCAACCCCAAGATCCAGAGTATTCATTTGGAGCGGTTTCCAGTCCACAAAGCCCGCTTCAGCGCAGATGGAGAACAGGTCATTGCCACCAGTTTTCACAACAGGCTCTTCTACGTTTATGACATGATGGCGGGGAAAGTAATCCCTGTATACAAAGTCAGAGGTCTAGATGAGAGAAAAGTGAAAGAATTTGAAGTGTCTCCAGATGGTTCATTTCTGCTGCTAACTGGGACCTCGGGCTATCTCCATTTACTGACCATGAAGACAAAGGAACTGGTGCGGAGTATGAAGATAAATGGGGATGTTGCTGGAGCTGTGTTTTCCCCTGATGGCAGCAAAGTCTACACCAGTTCTGATGAAGGAGAGGTGTTCATTTGGGATGTTAAGAGCAGCAAATGTGTACACAAGTTCATGGATGATGGCTGCATCAAAGGAACATGTATAGCAGTGTCTAGAAATGGACAGTATCTAGCTTGTGGCTCCAACTCCGGGGTGGTGAACATCTACTCGCAAGAAGGTTTCTTTAAGGAATCAAATCCCAAACCAGTTAAAGCCTTAATGAATCTGGTGACGTCAGCCACTTCACTGTCCTTTAACCCCACCACAGAAATACTAGCCATAGCGTCCAGTTTAGAAGATGAGGCCATCAAACTGgttCACATACCCAGCTTCACTGTCTTTTCTAACTTCCCTGTGTTCCGGAGGAAGACCGTTTTCCTGCCACAGTGTATGGACTTCTCTCCGAGGAGCGGCTTTTTCTCTGTGGCAAACAATAAAGGCAGAGCACTTTTGTACAGGCTAAAACATTATCCAGACTTTTGAAGACATTCTATGTTTTTCTGCATATTGCGCAGATTTCTCGCCACACTCGATTGGGTTATTTGCCCTTTGTTTTCGCTCCAATCCTCTGTGATGGTTTGTattactaataaaacatttt

Function

GO: NA

KEGG:

id description
K14553 UTP18; U3 small nucleolar RNA-associated protein 18

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52393 lncRNA downstream 186801 19776524 ~ 19776729 (-) True G42058
TU52391 lncRNA downstream 278872 19684436 ~ 19684658 (-) True G42056
TU52245 lncRNA downstream 1265923 18696820 ~ 18697607 (-) True G41925
TU52242 lncRNA downstream 1303008 18660254 ~ 18660522 (-) True G41922
TU52190 lncRNA downstream 1529813 18429054 ~ 18433717 (-) True G41875
TU52419 lncRNA upstream 8088 19986243 ~ 19987735 (-) True G42078
TU52493 lncRNA upstream 423553 20401708 ~ 20405085 (-) True G42136
TU52621 lncRNA upstream 688190 20666345 ~ 20674228 (-) True G42242
TU52672 lncRNA upstream 911528 20889683 ~ 20890288 (-) True G42278
TU52673 lncRNA upstream 911528 20889683 ~ 20890288 (-) False G42278
AMCG00013078 mRNA downstream 573409 19211843 ~ 19390121 (-) True AMCG00013078
AMCG00013075 mRNA downstream 754526 19080736 ~ 19209004 (-) True AMCG00013075
AMCG00013070 mRNA downstream 892158 19069196 ~ 19071372 (-) False AMCG00013070
AMCG00013069 mRNA downstream 917484 19025572 ~ 19046046 (-) True AMCG00013069
AMCG00013071 mRNA downstream 958270 18978443 ~ 19005260 (-) False AMCG00013071
AMCG00013080 mRNA upstream 10706 19988861 ~ 20005821 (-) True AMCG00013080
AMCG00013083 mRNA upstream 390991 20369146 ~ 20372204 (-) True AMCG00013083
AMCG00013085 mRNA upstream 415499 20393654 ~ 20397861 (-) True AMCG00013085
AMCG00013084 mRNA upstream 428402 20406557 ~ 20445394 (-) True AMCG00013084
AMCG00013090 mRNA upstream 555428 20533583 ~ 20538805 (-) False AMCG00013090
TU52331 other downstream 892112 19068245 ~ 19071418 (-) True AMCG00013070
TU52316 other downstream 940752 18977060 ~ 19022778 (-) False AMCG00013071
TU52315 other downstream 964764 18977060 ~ 18998766 (-) True AMCG00013071
TU52133 other downstream 1719437 18242750 ~ 18244093 (-) True G41836
TU52091 other downstream 1772008 18176061 ~ 18191522 (-) True G41807
TU52412 other upstream 2181 19980336 ~ 19982880 (-) True G42076
TU52536 other upstream 553039 20531194 ~ 20545811 (-) True AMCG00013090
TU52810 other upstream 1273952 21252107 ~ 21301421 (-) True G42366
TU52828 other upstream 1328031 21306186 ~ 21307693 (-) False AMCG00013112
TU52819 other upstream 1358062 21336217 ~ 21517177 (-) True G42371

Expression Profile