RNA id: AMCG00013078


Basic Information

Item Value
RNA id AMCG00013078
length 588
RNA type mRNA
GC content 0.49
exon number 11
gene id AMCG00013078
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 19211843 ~ 19390121 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgttGTCCATCCTGAACATTGAATATGGATCTATAGCGGTGCTCAGCAAAATTCACCCAAAATCCATGAAGGCTGaGGCTGAGACTATGAAGGTGCTTCCATCTGTAGATAAGGCAGATgagcTGCGAATGAACTCCATGACTGGCATCCcagaaaccaacaaacaaaaaacaacaacccataAAGAAGTACGAAATGAAACTAAAGCAATCCGGGATGTATCCAGCCGCGGTGCTGCGGGCAAGTTCTTGGAGATCACTGTAGCTTGGAAACTGGCTACTCGGATTAAACGGAAACAGCGGGCGGACGCAAGccCTATGATAAAGAGATTTAAGGTCGGGGGAACCATGTACAATACAGGCCGGCATGTTTCCCTGCGTCTGGACAAGGAGCACTTGGTAAACATCTCAGGAGGCCCCATGACATACAGCCACAGGTTGGAAGAGATCCGGTTACACTTTGGCAGCGAAGACGGCCAGGGCTCGGAGCATCTACTCAACGGACAAGCTTTCTCTGGGGAGTCGGTAGATGCCCGCATTGTTATCCAGAGGAGTTTATCCCCTTTAGCCATCCATGAgctatgttaa

Function

GO:

id name namespace
GO:0051962 positive regulation of nervous system development biological_process
GO:0051963 regulation of synapse assembly biological_process
GO:0044089 positive regulation of cellular component biogenesis biological_process
GO:0051965 positive regulation of synapse assembly biological_process
GO:0050803 regulation of synapse structure or activity biological_process
GO:0050807 regulation of synapse organization biological_process
GO:0050808 synapse organization biological_process
GO:0007416 synapse assembly biological_process

KEGG:

id description
ko04727 GABAergic synapse
ko05032 Morphine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52245 lncRNA downstream 514236 18696820 ~ 18697607 (-) True G41925
TU52242 lncRNA downstream 551321 18660254 ~ 18660522 (-) True G41922
TU52190 lncRNA downstream 778126 18429054 ~ 18433717 (-) True G41875
TU52158 lncRNA downstream 825637 18332841 ~ 18386206 (-) False G41858
TU52391 lncRNA upstream 294315 19684436 ~ 19684658 (-) True G42056
TU52393 lncRNA upstream 386403 19776524 ~ 19776729 (-) True G42058
TU52419 lncRNA upstream 596122 19986243 ~ 19987735 (-) True G42078
TU52493 lncRNA upstream 1011587 20401708 ~ 20405085 (-) True G42136
TU52621 lncRNA upstream 1276224 20666345 ~ 20674228 (-) True G42242
AMCG00013075 mRNA downstream 2839 19080736 ~ 19209004 (-) True AMCG00013075
AMCG00013070 mRNA downstream 140471 19069196 ~ 19071372 (-) False AMCG00013070
AMCG00013069 mRNA downstream 165797 19025572 ~ 19046046 (-) True AMCG00013069
AMCG00013071 mRNA downstream 206583 18978443 ~ 19005260 (-) False AMCG00013071
AMCG00013072 mRNA downstream 247508 18963859 ~ 18964335 (-) True AMCG00013072
AMCG00013077 mRNA upstream 573409 19963530 ~ 19978155 (-) True AMCG00013077
AMCG00013080 mRNA upstream 598740 19988861 ~ 20005821 (-) True AMCG00013080
AMCG00013083 mRNA upstream 979025 20369146 ~ 20372204 (-) True AMCG00013083
AMCG00013085 mRNA upstream 1003533 20393654 ~ 20397861 (-) True AMCG00013085
AMCG00013084 mRNA upstream 1016436 20406557 ~ 20445394 (-) True AMCG00013084
TU52331 other downstream 140425 19068245 ~ 19071418 (-) True AMCG00013070
TU52316 other downstream 189065 18977060 ~ 19022778 (-) False AMCG00013071
TU52315 other downstream 213077 18977060 ~ 18998766 (-) True AMCG00013071
TU52133 other downstream 967750 18242750 ~ 18244093 (-) True G41836
TU52091 other downstream 1020321 18176061 ~ 18191522 (-) True G41807
TU52412 other upstream 590215 19980336 ~ 19982880 (-) True G42076
TU52536 other upstream 1141073 20531194 ~ 20545811 (-) True AMCG00013090
TU52810 other upstream 1861986 21252107 ~ 21301421 (-) True G42366
TU52828 other upstream 1916065 21306186 ~ 21307693 (-) False AMCG00013112
TU52819 other upstream 1946096 21336217 ~ 21517177 (-) True G42371

Expression Profile