RNA id: AMCG00013080



Basic Information


Item Value
RNA id AMCG00013080
length 4394
RNA type mRNA
GC content 0.42
exon number 18
gene id AMCG00013080
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 19988861 ~ 20005821 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTTGATATTCAGCTGGAGTTCAATTTTTGGGGGTTTTAGTTTGATTTTGTGTTCTATTTCCCTCCTCCGGGACCTTACGATTGCACACCGAGGACAGAGAAACTACTCTGCATGAGGGGCTGATGGAAAACACAAGGGATTTGacTGAACACACTCCACGGTCAGAAAGGAAAAGGCGGGACTCCTTCGGGATGTTTGATGGGTATGACAGCTGCAGCGAGGAcaccagcagcagctccagttcagaggagagcgaGGAGGAGGTTGCTTCTATACCAGCCAGCCTGCCCATTATCAAGAACAATGGGCAGGTCTACACCTACCCCGACGGCAAGGCCGGAATGGctACTTGTGAAATGTGTGGGATGGTGGGAGTCCGAGATGCTTTCTACTCCAAAACCAAGCGCTTCTGCAGTGTTTCTTGCTCCAGAAGTTATTCTTCGAATTCGAAGAAAGCCAGTATTTTGGCTCGACTCCAGGGTAAACCGCCAACAAAAAAGGCTAAAGTCTTACAGAAACAACCTTTAATGGCTAAATTGGCAGCATATGCCCAGTACCAAGCAAACCAACAGAACCAAGCAAAATCAAAAACGGTGGTTCCTGTGGAGGGCTTTGATTGGGGTCGATATATTAGCAGCAATAATGTAATTGCAGCACCTGTGAGCTGTTTCAAACACGTACCCATGGGGACATCCTGGGGGGACATTTCAGAGAGCGTAAGGGTGGAAGTTCCCAATACAGACAGTAGCCTGCCAACGAAAGTCTACTGGATAGCAGGAATTGTAAAGTTAGCAGGCTTCAAGGCGTTGCTCCGGTATGAAGGCTTTGACAATGACACGAGTCGAGACTTTTGGTATAACCTCTGCGTTCCTGATGTGCACCCAGTGGGCTGGTGTGCTGGCAACGGCAAGCCTCTCGTACCTCCAAAATGTAAGGAAAACCGTCATAAATGCACCAACTGGAAAGCTTTCGTGATCAAGCGGCTCACTGGTGCCAAAACGCTTCCACAAGACTTCTCCACAAAGGTTCAGGAGAGCATGCAGTACCCCTTCAAGAAGTTGATGCGGGTGGAGGTGGTTGACAAGGGGCACCTGTGTCGGACTCGGGTGGCCATCGTGGAGTCTGTGATTGGGGGACGGCTGCGACTCGTGTACGAAGAGAGCGAGGATGGCACGGACGATTTCTGGTGTCACATGTACAGTCCCCTCATTCACTGCATCGGCTGGTCTCGGAGTATTGGCCACCGGTTCAAGCGATCAGACGTAGCAAAGAAAATAGAAGGCCAAGtggatgcacctggaagtttaTTTGTGAAGgtGAAAGATGTTGACCAAAGTGGGGAGTGGTTCAAAGATGGGATGAAGCTGGAAGCAATTGACCCTTTAAATCTGTCGGCAATATGTGTAGCTACTGTAAGAAAGGTGTTGGCAGACGGATACCTCATGATCGGGATAGATGGCTCAGAAGCTGCAGACGGCTCAGACTGGTTCTGCTATCATTCCACTTCCCCTTCAATATTCCCTGCTGGCTTCTGTGAAATCAACACGATTGAGCTCACACCACCTAGagGCTACACAAAACTCCCATTCAAATGGTTTGACTACCTCAAGGAAACTGGCTCCATAGCAGCTCCTGTGAAGCTGTTTAACAAGGAGGTCCCGAATCACGGCTTTCGCGCGGGGATGAAGCTGGAGGCCGTAGACCTCATGGAGCCTCGGTTAGTGTGCGTCGCCACAGTGACTCGCATCGTCCACCGGCTGCTACGCATCCACTTCGATGGTTGGGAAGACGAGTATGACCAGTGGGTGGACTGCGAGTCGCCGGACCTCTACCCCGTCGGCTGGTGTCAGCTGACCGGCTACCAGCTACAGCCTCCTGCCGCACAGAGCTCCAGAGAAATCCCCTCAAGTGTGACCAAGCAGAAGAAGAAGTCCCAGCAGTACAAAGGCCAAAAGAAAAAGAGGAAGATTCCAGTTGGGAAGAAGCCTGTCAGTTTGTCGAGTCTGCCTATGACAGGCATGGTGAGGAGGAGCTTCTCTGGTGACGAAGGGCTGACTCCCCCCCCATTCCGATCCCATCCTGCACAAGCAGCCCCGGGGGCCCTGCAGCCTCCCAGCACTAGCAGAGAGCTCAGTCCCAGCCTCAAAACAGACAAGGAGCAGAATGtggcCTCAATGCAGCTGAAGGAAGAAGTAATAGAAGGAGATGAATTTACCTTCTCGCAAGGTGTCTCGGACCAGGAAAGTAATGGTTCCGGCAGCTACTACATCAAACAAGAACCGTAAGACAGCCAAGGGacttttgagaaaaacaaaagccttatttcttatttctgtctCGGCCAGCACTTGGATTTCAGTTTGGGGACTGATGCATAGTGATACTTACTGACACAGAAGAGATTTGACGTGAGATCTTACTTAGGGTTTGTTGGgtttaaaaggcaaaataaGGAATAGCTAGGAGAAAATCAGAGACCTATTTAGCAGGATGACTTTTTGAACAATTTGCCAGATTGACTTAAACGTTCAATGTACTTGAAGTTTTCAAACACgttttgtaatattttccaaGTTTGAAACTGTTGTGTATctttcacagatttattttaaaaattttttagtttgtttttgttttttgttttgtattttttttttgtagcaaaGTTTTGGTGTTCAGTgaacaattttaatttgaagggGAAAGTGGACAGAGGTTTGTTCTGAAAAGCTGGCATGTGTGTTCGGAATATATTATCGAAATCATAAACCTTACTGGTATAAGCAAACActtgtaataaaatgaaaacactgtctTATAGGTTGTAATGCAGGAATGTAGAACTCTGGTTTTGCCTGTTGCGAATTCTGCATCATCTCAATTGCCAAGATATTCTTGTTGATACTGAAGCTTTTTtctagataaatacattttaattgataaaatcaACTTGAGAAATGAATCGTCAggcttatttttaatatttaaaagctCTGCAAGGTCAATAAAGAAATGTGATGCAATTTACAGGTGAATATACAGATATGCAAACTGAGTTTTTATGTTTCAACggagagatatatatatataatgtcattcTTTTCTGATATACCATACCTATCTGtactttattcatatttttagagCCATATTGTTGCAAATAACAGATAGGTTAAATATTTATCTGAGCCTCAGaatgaaatgtttcttattttattattattcatattattattagcagcagCAAGTCTCCATATTTAAAGAGATTAACAGCTCACAAACCGAAAGCagactttttttcctttagtctatttgtttttgctttttaaaggtctcattttttttctgtttttattttttattttttttcaaagaattCTTCAAACGGACATCATCATACTACCTCTTAAAGAAATCTTTGTAATTGTAAGATTTCCTGGTCTTTGAGGTAGTCGGTCTTCATACAGTTGCCATTGTGTATATTCTAAACAGATGTCTATTTcctaaaaacataattttatctttcagtTAACTTGTTAAATTACAGTAGAACGTGATTTTGGGCACCTGCCACTGGATTTCAGTATGTTTATCCATTACCCCTACAGTCTTGATCTACTTATGCAAGTGAAACTAGGGAGCTACCATTTTGCAGTGTGTCGTTTAGTATACTAGAATTAAAACCTACTTTCCATCTTCATCCAAAGCTTAAAGTGGCACATACTGTATACACTAAggatgtgtgtatatttgtgtgtcttcTATAAACAAAGGTTAACACTTTGTGTGAGCCACTTACATTGAGACTTATTGTGCAATAATcacatatttttatacaaaaattATTGCTATAACTGGCTCTCTCATAGAAAAAACTATAAGACAGAGTTGTTGCATAAAATGACATTTCCTATATTAACATAGCTGTAATCTATTTCATGCtagatacattataattattatggtCTATCTGGTTCAGTAATTGTAGGGAGCATTGCGTTTTCCTGCACTATAGTCTCACTTCATATACCAGTAAGGTTAACAGGATAAATTCTCAGgaaatatttgcattgtgttttataGGCATATTGGGGGCTGTAGCCTGTTGCGTTCAAAGTTATCAGTATTTAGATTATACACAGAGCATCTTAAGTAAAGGGTACAAAGGAacctttttgttagtttttggcCTAGAATCAGTGTTCATAGAAGTATTACGAACATTGAAAAAACAGTATTTGACATTAaacttaaatgtctttcttgtCTTTGGCACAACAGATATTTTTGGGGACAATgtttgatttacttatttttatttttacacacaatttGGAAACAGTGATTCTTGGCCAAGCAGAGgttccttttaattttaatgagaaTGCTTTTTT

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU52419 lncRNA downstream 1126 19986243 ~ 19987735 (-) True G42078
TU52393 lncRNA downstream 212132 19776524 ~ 19776729 (-) True G42058
TU52391 lncRNA downstream 304203 19684436 ~ 19684658 (-) True G42056
TU52245 lncRNA downstream 1291254 18696820 ~ 18697607 (-) True G41925
TU52242 lncRNA downstream 1328339 18660254 ~ 18660522 (-) True G41922
TU52493 lncRNA upstream 395887 20401708 ~ 20405085 (-) True G42136
TU52621 lncRNA upstream 660524 20666345 ~ 20674228 (-) True G42242
TU52672 lncRNA upstream 883862 20889683 ~ 20890288 (-) True G42278
TU52673 lncRNA upstream 883862 20889683 ~ 20890288 (-) False G42278
TU52824 lncRNA upstream 1188328 21194149 ~ 21195350 (-) True G42376
AMCG00013077 mRNA downstream 10706 19963530 ~ 19978155 (-) True AMCG00013077
AMCG00013078 mRNA downstream 598740 19211843 ~ 19390121 (-) True AMCG00013078
AMCG00013075 mRNA downstream 779857 19080736 ~ 19209004 (-) True AMCG00013075
AMCG00013070 mRNA downstream 917489 19069196 ~ 19071372 (-) False AMCG00013070
AMCG00013069 mRNA downstream 942815 19025572 ~ 19046046 (-) True AMCG00013069
AMCG00013083 mRNA upstream 363325 20369146 ~ 20372204 (-) True AMCG00013083
AMCG00013085 mRNA upstream 387833 20393654 ~ 20397861 (-) True AMCG00013085
AMCG00013084 mRNA upstream 400736 20406557 ~ 20445394 (-) True AMCG00013084
AMCG00013090 mRNA upstream 527762 20533583 ~ 20538805 (-) False AMCG00013090
AMCG00013095 mRNA upstream 545046 20550867 ~ 20578477 (-) True AMCG00013095
TU52412 other downstream 5981 19980336 ~ 19982880 (-) True G42076
TU52331 other downstream 917443 19068245 ~ 19071418 (-) True AMCG00013070
TU52316 other downstream 966083 18977060 ~ 19022778 (-) False AMCG00013071
TU52315 other downstream 990095 18977060 ~ 18998766 (-) True AMCG00013071
TU52133 other downstream 1744768 18242750 ~ 18244093 (-) True G41836
TU52536 other upstream 525373 20531194 ~ 20545811 (-) True AMCG00013090
TU52810 other upstream 1246286 21252107 ~ 21301421 (-) True G42366
TU52828 other upstream 1300365 21306186 ~ 21307693 (-) False AMCG00013112
TU52819 other upstream 1330396 21336217 ~ 21517177 (-) True G42371
TU52829 other upstream 1331246 21337067 ~ 21375763 (-) True G42381

Expression Profile


AMCG00013080 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
End of interactive chart.

AMCG00013080 Expression in each Bioproject

Bar chart with 7 bars.
AMCG00013080 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 70.
End of interactive chart.

Homologous


species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000055_01796139_01801260.mRNA False 1907 mRNA 0.44 7 CI01000055 1796139 ~ 1802186 (+)