RNA id: AMCG00013081


Basic Information

Item Value
RNA id AMCG00013081
length 342
RNA type mRNA
GC content 0.62
exon number 1
gene id AMCG00013081
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 20007617 ~ 20007958 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgGAGTTAGAGGACGGAGTTGTGTACCAGGACGACCCGGGGACGGCGGCTATGATGTCGGAGCGGGTGTCGGGCCTGGCGAGCTCCATCTACCGCGAGTTCGAGCGGCTCATCGGGAAATACGACGAGGACGTGGTGAAGGACCTGATGCCGCTGGTGGTGGCGGTGCTGGAGAACCTGGACTCGGTGTTTGCCGAGAACCAGGAACACGAAGTGGAGCTGGAGCTGCTGAAGGAGGACAACGAGCAGCTCATCACCCAGTACGAGCGGGAGAAAGCGCTACGGAAACACGCCGAGGAGGTGAGTGCAGACAGCGCCTGGAGCCGGGGTCGCTATCGCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52418 lncRNA upstream 19757 19986178 ~ 19987860 (+) True G42077
TU52389 lncRNA upstream 420824 19586528 ~ 19586793 (+) True G42054
TU52321 lncRNA upstream 939407 19066973 ~ 19068210 (+) True G41990
TU52293 lncRNA upstream 1033255 18969911 ~ 18974362 (+) True AMCG00013068
TU52478 lncRNA downstream 379726 20387684 ~ 20392609 (+) True G42127
TU52537 lncRNA downstream 543302 20551260 ~ 20551817 (+) True G42172
TU52549 lncRNA downstream 619136 20627094 ~ 20627334 (+) True G42177
TU52658 lncRNA downstream 831631 20839589 ~ 20840560 (+) True G42269
TU52670 lncRNA downstream 881717 20889675 ~ 20890332 (+) True G42277
AMCG00013076 mRNA upstream 24764 19980540 ~ 19982853 (+) True AMCG00013076
AMCG00013074 mRNA upstream 929916 19072236 ~ 19077701 (+) True AMCG00013074
AMCG00013073 mRNA upstream 943078 19048484 ~ 19064539 (+) True AMCG00013073
AMCG00013068 mRNA upstream 1036549 18967429 ~ 18971068 (+) False AMCG00013068
AMCG00013064 mRNA upstream 1314866 18691996 ~ 18692751 (+) True AMCG00013064
AMCG00013079 mRNA downstream 26259 20034217 ~ 20080006 (+) True AMCG00013079
AMCG00013082 mRNA downstream 249702 20257660 ~ 20258634 (+) True AMCG00013082
AMCG00013088 mRNA downstream 390651 20398609 ~ 20403101 (+) True AMCG00013088
AMCG00013087 mRNA downstream 477065 20485023 ~ 20502341 (+) True AMCG00013087
AMCG00013086 mRNA downstream 504758 20512716 ~ 20513526 (+) True AMCG00013086
TU52302 other upstream 978339 19025561 ~ 19029278 (+) True G41978
TU51470 other upstream 4376990 15620785 ~ 15630627 (+) False AMCG00012982
TU51437 other upstream 4528251 15477179 ~ 15479366 (+) True G41264
TU51320 other upstream 4870888 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 5374204 14632357 ~ 14633413 (+) True G41059
TU52747 other downstream 1261717 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 1362885 21370843 ~ 21418787 (+) True AMCG00013126
TU52772 other downstream 1418702 21426660 ~ 21486808 (+) True G42344
TU52771 other downstream 1476949 21484907 ~ 21486808 (+) False G42344
TU52773 other downstream 1477363 21485321 ~ 21486808 (+) False G42344

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051206 True 1923 lncRNA 0.50 9 NC_007114.7 18342553 ~ 18373604 (-)
grasscarp (Ctenopharyngodon idella) CI01000047_06900704_06954882.mRNA True 3834 mRNA 0.56 28 CI01000047 6900704 ~ 6954882 (-)