RNA id: AMCG00013082


Basic Information

Item Value
RNA id AMCG00013082
length 975
RNA type mRNA
GC content 0.49
exon number 1
gene id AMCG00013082
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 20257660 ~ 20258634 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGCTTGAAATTCAAGTAGCACTCAACTTTataatttcttatttgtatAACAAACTTCCCCGGCGGCGTGTGAACATTTTTGGTGAAGAGCTTGAAAGGCAACTGAAGAAGAAATACGAGGGGCACTGGTACCCGGACAAGCCATACAAAGGGTCAGGATTCAGATGTATACACGTAGGGGAGAAAGTGGACCCAGTTGTGGAACAAGCAGCCAAAGAAAGTGGGTTGGACATTGAAGACGTTCGCAACAACTTGCCTCAGGATCTTAGCGTTTGGATCGATCCTTTCGAGGTGTCTTATCAGATTGGAGAAAAGGGGCCTGTAAAGGTGCTTTACGTGGATGATAATAACAATGAGAATGGCTCCGAATTGGACAAGGAGATCAAGAACAGCTTTAACCCTGAAGCCCAGGTGTTTATGCCAATCAGTGACCCAGTCGGGGCCTCCTCTGTTTCCAGCTCGCCATCACCTCCCTTTGGCCACTCCGCTGCTGTGAGTCCCACCTTCATGCCCCGCTCCACCCAGCCTTTAACCTTCACCACTGCCACGTTTGCTGCCACCAAGTTTGGTTCGACCAAAATGAAGAACAGCGGCCGAAATAATAAGGTCGCGCGCACTTCCCCCACCAATCTCGGCTTGAATGTGAATAACCTTTTGAAGCAGAAAGCCATCTCAACGTCAATGCATTCTCTGTATGGGCTCGGCCTTGGCAGCCAGCAACAGAAAACTTCTGCCCTTTCCCCCAATGCCAAGGAATTCGTTTTCCCAAACATCCAGGGGCAGGGCAGTGCCAGTGCAATGTTCCCAGGTGACAACTCCCTTAACCTCAGTCCTCTCCCGTACAGTAATGCCTTTGATATGTTTGCGGCCTATGGAGGTCTCAATGAGAAGTCTCTCATGGATGGTTTAAATTTCAGCTTGAACAACATGCAGTATTCTAACCAGCAATTCCAGCCTGTGATGGCTAACTAA

Function

GO: NA

KEGG:

id description
K14443 TOB; protein Tob/BTG

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52418 lncRNA upstream 269800 19986178 ~ 19987860 (+) True G42077
TU52389 lncRNA upstream 670867 19586528 ~ 19586793 (+) True G42054
TU52321 lncRNA upstream 1189450 19066973 ~ 19068210 (+) True G41990
TU52295 lncRNA upstream 1283298 18969911 ~ 18974362 (+) False AMCG00013068
TU52294 lncRNA upstream 1284639 18969911 ~ 18973021 (+) False AMCG00013068
TU52478 lncRNA downstream 129050 20387684 ~ 20392609 (+) True G42127
TU52537 lncRNA downstream 292626 20551260 ~ 20551817 (+) True G42172
TU52549 lncRNA downstream 368460 20627094 ~ 20627334 (+) True G42177
TU52658 lncRNA downstream 580955 20839589 ~ 20840560 (+) True G42269
TU52670 lncRNA downstream 631041 20889675 ~ 20890332 (+) True G42277
AMCG00013079 mRNA upstream 177654 20034217 ~ 20080006 (+) True AMCG00013079
AMCG00013081 mRNA upstream 249702 20007617 ~ 20007958 (+) True AMCG00013081
AMCG00013076 mRNA upstream 274807 19980540 ~ 19982853 (+) True AMCG00013076
AMCG00013074 mRNA upstream 1179959 19072236 ~ 19077701 (+) True AMCG00013074
AMCG00013073 mRNA upstream 1193121 19048484 ~ 19064539 (+) True AMCG00013073
AMCG00013088 mRNA downstream 139975 20398609 ~ 20403101 (+) True AMCG00013088
AMCG00013087 mRNA downstream 226389 20485023 ~ 20502341 (+) True AMCG00013087
AMCG00013086 mRNA downstream 254082 20512716 ~ 20513526 (+) True AMCG00013086
AMCG00013089 mRNA downstream 265157 20523791 ~ 20534323 (+) True AMCG00013089
AMCG00013092 mRNA downstream 299594 20558228 ~ 20565344 (+) True AMCG00013092
TU52302 other upstream 1228382 19025561 ~ 19029278 (+) True G41978
TU51470 other upstream 4627033 15620785 ~ 15630627 (+) False AMCG00012982
TU51437 other upstream 4778294 15477179 ~ 15479366 (+) True G41264
TU51320 other upstream 5120931 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 5624247 14632357 ~ 14633413 (+) True G41059
TU52747 other downstream 1011041 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 1112209 21370843 ~ 21418787 (+) True AMCG00013126
TU52772 other downstream 1168026 21426660 ~ 21486808 (+) True G42344
TU52771 other downstream 1226273 21484907 ~ 21486808 (+) False G42344
TU52773 other downstream 1226687 21485321 ~ 21486808 (+) False G42344

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051200 False 2279 mRNA 0.43 2 NC_007114.7 18185616 ~ 18189283 (-)
grasscarp (Ctenopharyngodon idella) CI01000034_05110485_05112103.mRNA True 2239 mRNA 0.45 2 CI01000034 5109450 ~ 5112164 (+)