RNA id: AMCG00013088


Basic Information

Item Value
RNA id AMCG00013088
length 1371
RNA type mRNA
GC content 0.54
exon number 10
gene id AMCG00013088
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 20398609 ~ 20403101 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGTCCGCCGCCCAGTTACTGGACGAGCTAATGGGCCGGGATAGGAACTTAGCGCCGGACGAGAAACGTAGTAACGTACGCTGGGATCATGAGACGgtttgCAAATACTATCTCTGTGGGTTTTGCCCAGCggaattatttacaaatactcGATCTGACTTGGGTCCGTGTGAAAAAATTCATGATGAGAACCTGAGGAAACAGTATGAGAAGAGTTCACGTTTCATGAAAGAGGGGTACGAGAGAGACTTCCTTCGGTATTTACAGAGTCTGCTGGCGGAAGTGGAGCGAAGAATCCGCAGAGGACATGCCAGACTGGCACTGTCTCAGGCCCAGCAGAACGCCGGCGCACCTGGACCATCGGGAAAGAATGAGGAGAAAATTCAAGTCTTGACAGAAAAAATAGAAGAACTTGTCCTTCAGATAGAGGAGCTGGGCTCGGAGGGGAAGGTGGAGGAGGCCCAGGGGATGATGAAGCTTGTTGAGCAGTTAAAAGATGAACGAGAACTGCTTCGCTCTACAACTTCTACTATTGAAAGCTTTGCAGCTCAGGAGAAGCAGATGGAAGTGTGTGAGGTGTGCGGTGCATTCCTCATCGTGGGAGACGCCCAGTCTAGGGTGGACGATCATCTCATGGGGAAGCAGCACATGGGCTATGCTAAAATCAAATCGACTGTGGAAGAGTTGAAGGAGAAGCTCCGAAGGCGTTCCGAAGATCCAGAGCGTGATGACCgaggaaggaaggagagagaagacCGGGAAcgcgagagagaggagagggagaagcggaggaagaaggaggaggaagaaaaggagaaggagaaagagagagagaaagagaaggaacgagagaaagagagagaaaaggagaaggaaagggagagggagcgagagagggagagggagcgggagagagacCGGGACAGGCGTCGTCGCAGTCACTCGCGCAGCAGGCACTCGAGCAGAACCTCTGAGAGGAGACGCAGCCGTTCCAGGGACCGCAAAAGGTCCAGGAGCAAGGAGCGGGAGAGGAAGCGAAGCAGGAGCAGGGACCGCGAGCGCCGCAGGAGCAGGGATCGCTCCGAGAGGAAACACCGCTCCCGCAGCCGAGAGAGGAGGCGGTCCAGGAGTGCGGAACGCAAATCGCACAAGCACAGGAGCAGGAGCCGGGAGAAGGAGCGAGACAGGAGGTCTAAAGACAAAGATCGGAAGGACTCGGATGAGAAGAAGAGCAGCAAGAAATCCAGCTGTGACGAAAAGCCGAGTGAAGCCGGCAAGGCTGAGCAAATGGAAGTCGATGCTCCAAAGCCTGAGATCAACGGCACAAGTGAAGACCTACAATCTGAAGGTGACACTCAGTCCAATTAA

Function

GO:

id name namespace
GO:0006376 mRNA splice site selection biological_process
GO:0005685 U1 snRNP cellular_component
GO:0003729 mRNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52478 lncRNA upstream 6000 20387684 ~ 20392609 (+) True G42127
TU52418 lncRNA upstream 410749 19986178 ~ 19987860 (+) True G42077
TU52389 lncRNA upstream 811816 19586528 ~ 19586793 (+) True G42054
TU52321 lncRNA upstream 1330399 19066973 ~ 19068210 (+) True G41990
TU52295 lncRNA upstream 1424247 18969911 ~ 18974362 (+) False AMCG00013068
TU52537 lncRNA downstream 148159 20551260 ~ 20551817 (+) True G42172
TU52549 lncRNA downstream 223993 20627094 ~ 20627334 (+) True G42177
TU52658 lncRNA downstream 436488 20839589 ~ 20840560 (+) True G42269
TU52670 lncRNA downstream 486574 20889675 ~ 20890332 (+) True G42277
TU52751 lncRNA downstream 853484 21256585 ~ 21259588 (+) True G42330
AMCG00013082 mRNA upstream 139975 20257660 ~ 20258634 (+) True AMCG00013082
AMCG00013079 mRNA upstream 318603 20034217 ~ 20080006 (+) True AMCG00013079
AMCG00013081 mRNA upstream 390651 20007617 ~ 20007958 (+) True AMCG00013081
AMCG00013076 mRNA upstream 415756 19980540 ~ 19982853 (+) True AMCG00013076
AMCG00013074 mRNA upstream 1320908 19072236 ~ 19077701 (+) True AMCG00013074
AMCG00013087 mRNA downstream 81922 20485023 ~ 20502341 (+) True AMCG00013087
AMCG00013086 mRNA downstream 109615 20512716 ~ 20513526 (+) True AMCG00013086
AMCG00013089 mRNA downstream 120690 20523791 ~ 20534323 (+) True AMCG00013089
AMCG00013092 mRNA downstream 155127 20558228 ~ 20565344 (+) True AMCG00013092
AMCG00013093 mRNA downstream 164046 20567147 ~ 20625298 (+) True AMCG00013093
TU52302 other upstream 1369331 19025561 ~ 19029278 (+) True G41978
TU51470 other upstream 4767982 15620785 ~ 15630627 (+) False AMCG00012982
TU51437 other upstream 4919243 15477179 ~ 15479366 (+) True G41264
TU51320 other upstream 5261880 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 5765196 14632357 ~ 14633413 (+) True G41059
TU52747 other downstream 866574 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 967742 21370843 ~ 21418787 (+) True AMCG00013126
TU52772 other downstream 1023559 21426660 ~ 21486808 (+) True G42344
TU52771 other downstream 1081806 21484907 ~ 21486808 (+) False G42344
TU52773 other downstream 1082220 21485321 ~ 21486808 (+) False G42344

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000112_01865388_01878028.mRNA True 1575 mRNA 0.49 12 CI01000112 1865101 ~ 1878188 (+)