RNA id: AMCG00013089


Basic Information

Item Value
RNA id AMCG00013089
length 4007
RNA type mRNA
GC content 0.40
exon number 5
gene id AMCG00013089
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 20523791 ~ 20534323 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATATTTTGGAGAGTTTTGATAATCATCCTCCCCTGATTCTACCATGCAATCATTTCCACATTGAACTGGGGAAGCCCATCCAAGAGCCCCAGCTATTTTCCCAGCTGATCCAGCTGCAGGAGTTTCTGAAGGGTATCGAGGCAGGCGAGGCATCGAGCAGAACTGTGCAGCTTCTGCAGGAGCAGCAAATCCCAGCCGAAGAGGAAAGGAAAATGGCGTCCTGCTCTTCAGAAACCTTGAAAGACTTTGTTTCTGCGGAGCCCAACAACAGTGATCCAGCCAATGTGATACGGGTGGCCGAAGAGGAGCCTGAGGAGAAAGGGCAGACTTCTGCAATGACACCCCATGTccgtttttcacattttcccaGCACCAATGACCTGAGCTCTTGTGAGGCCATGCTCACTCAGAAACTGAAGAACCTGGAGCTTCAGAGCAGCCTGCCTGGACAGAGTGACCTCAGTTGCCATAAGAAACTGGCTTTAGACCCTTCCTGCCTCCTCACCCCTCCCAACACTCCCCAAGGCCTGGAGCTGGCTGAGGCAGAGGCCGATATCCTGGAAGGTCCCCACGGGCACGTCCTAAATGGTGCCTGTGCAAGAGAAGAGAGTGAGAATTGTGGGTCGGGCACCAGTGACCAGAGGAGCACAGAAGAGGAGGAAGTATTCACTGTTGAGCTGGAGAGAGGTCCCCATGGGCTCGGCCTGGCCTTAGTTGACGGGATGAAAACCCCATTGAAGATGAGTGGGATTTACGTCAAGTCTGTAGTGCCCGACTCTCCTGCAGCCAGGTGCAAAAAGTTATGTTTGGGGGATCGCATTCTGGCAGTCAATGGATCGAGCTTGGTGGGAATCGACTATCACATCGGACGAGAGCTCATCCGGGCTTCGGGCAACCGGCTGAGATTTCTGGTTGCCAAATCTGAGTCCAGAGCTCCACCCAAGAACTCGGGGACAAAATGCTAACCACGTTACGCAGTGTTCATCAAAACACTCCGTCTCTTTGACCCTGGTCACCAAGTGCACTTAGGGACTGAGCAGGGACTAAGGATGGcgaggtgttttgttttttgtttttggtcttcTCCACAGGAGAATAAGGTGACTGTTACAAAAGTGAAAAGCACTTCCCAATGGACAGATCTAGTGGATGTATGTGTAGGAATTTGACACAGCTGGTTCTCCCAGAATGAAAAGGACCGTTTTTGTCCAATCCAGTTTTGaatttcttgatttttgtccAGGCAGAAACACCTAGGTTATTGTTCTGCCTGCTTTGATTGTATTGATGTTTCTCAGGccaaaaatcaaatatttttcaactGGCAGTCAACCAATATTCTGGCTTATGTGGGGTGGTCGAAACACAGGCAAAAACTGTGGATGGCTTTTTTTCCCTTGaggtatttgtgtatatataatcaaattCTCTTCCTGCTCTAGGACAGTGTTTTAGCATAGCCACAGACTTCAGATGGATGCCTGGTTTGTATCCATTGCTCAGAATTGCCATTTGGGGTAAAAGAAAACTTCTCCTGAGACAAACTCAAGAGACGAAGTAGACTCCTCAGACCACTTTTATTCCGTGTAGCATAAAATCCAGTATCTTTATATTCTGTATGTAAGAACACAACTTTTGGCAGCAAATTGGACTAATTTCAGCCTATAGCCAAGCAAGAAAGTTCCGAACAATTGTAGTTGTCATTGTGAGAATTTGTACAGCAGTTCTGTGTTGTAAAGCATGGACAATGCTTTTTGCATGTTGGGTGTCTTTCAAGCAATcagcaaatgttttatatttatatttgtaacaaCTACATAAGCAAGTTATTCTGACTGTGTCACAGTATAATGTACTGTGTAAACAGTGTAAAAAGCCTATCTTTATTGTATAGAGCAGATGCTTTATATAGATGAATATATAATGACTATTGAAATGTGCTTCCCTGTTTTGATTGAAAATGCTAGGGTCCTGTTTGAAGTTGCCACTCATTTGGAAAGGACAAACTAGATGTTTAAGCAGGggtgttgttttgctttgcttgtatCCATCTGGTCTTTTTCTCTTATGAAATGAATTACATGGGGATTTATCCAATGTATCAGACCCCAGGTTCCAGATTCATCCTGTATATTTAATCCTTCTTGGAAAAAAATGCAGCTTGTGAATGTTTGTAATTGATAGAAATTCTTTGCTAGGATCAGTAAAGCCTGGGTTTcgctaagaaaaaaaaaagaaattgactTCTTCTACTGTTGCCAACAAGACAGTGTTATTTCATCCATTTTTATgacattatttgatttgatttttgtaacatttatattgacAAGTATTTTGTGATACATATCAGTATATctgattttccttttgttaaacCGAATAAAACTGGATAACTCCCTATGTACCTTTGCAACATAATAAATGTTAtgacatattatatttatatgtgtggaatatgcttgttttttttcttactcTATTGCAACAAAGAGTGTTGTGCAGTTATGACTTTATTTAGAAGAAGCTAGTTAGGACAGTATTTTTTATGCTGCTGTTACATACAGTACCGTAAgcataataattaaattggtCAGTGTTCTGCAGATGTGTGAAAAACCTCTGTTTTCTAGGCAGATTGAAAAAGCTGGTGGTACTGTGGCCACTTTATGGTCTAATTAGGAGGGCGTGTTGAATTGGTACAGTTTGAATTGGTCTGTGGTTCTCATGCTTATAAacaaggggaagaaaaaaaacaacactcattgcaaaatgtattatttttgtgaaaccaacatttattttggattcCCTTTGATTGCACAGTGTTGCACTTGTACACTGGGATTTCAGAGTGggagggtgaaaaaaaaacaagaataaataaaaataaacagtgcagTAAACAGAAATATCTATTGTTTGTGTGAGTTTGCATTGAAAGATGAGCAATCGGACCTCTTTCACAGTTCCTTTGTAAGCGTAAATTCAAACTGTTTATTGCAGATGATCATGTGTCTCATCAGAGGGGCTTCCTTTCTTTTAATGTTGATTTTCTTAGTTTGATTCTTAGTTCTTTTACTTTTgtacaaacacatttgacagcAGCTGATTATAGGGATATAACCTTTTATAAAGGAAATCCTGACACACAAATGTACTGCTTTccaatacagattaaaaataaatactttaatttagtAATGAGAAACCACACAACCTAACATTTTGAGGATGGGAAAATACAAGCTGTCTTCCTTCAGCTTTAATGGTGTCGAAGACCGAAATAATGATCACAGTTCAGGATGGGACAGTCACTGAACTCCACGCTGTAGTCGTAGTAAAGTTTTGCGTGAAAAGGTGATTCTTCGGGGCCTCCAATGAAGCCACACTCTTCAAGAGACTGACCAGGAGGGAGGACGGACTCCTGTGAGTAGGTTTTGTCCCTGAAAATGTTTAGTTGGGTGCTTTCAATCCCAACCTGTTCTCGGATCCTTTTTATGAGGCTGTACACTTTGATGCTGGAGGGAACCACTTCTTCAAAATTCCCAGGGTGGCATTTAACGTTATCAAACGTTATCAGCCTGAGATTCAGAAGAAGGAACCTGTAAATGGAGgatgtgtataaaaaaaaattaaaaataaacctatgGCACTTGTATCtcagcagaaatataaatattaaagttaTCCTGTACAGATAtgatttacaatgtttttgcaAAGCTTGAGAACCATCAAAAAATAACTCAAAAGCTAAATGCCAGCCATACTTTGGTTAACCTCCTGTGTATGCTGTCCAAAAATAATACCCAGTTGTTTCAACattgccttgcaaaagtattcatcccccttggtgtttttcctattttgttgcgttacaacctgtaatttaaatggatttttatttggatttcatgcaatggacaaaatagtccaaattgatgaagtgaaatgaaaaaaataacttgttttaaaaaaaataaaaaaaataaaaaacagaaaa

Function

GO:

id name namespace
GO:0035162 embryonic hemopoiesis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52478 lncRNA upstream 131182 20387684 ~ 20392609 (+) True G42127
TU52418 lncRNA upstream 535931 19986178 ~ 19987860 (+) True G42077
TU52389 lncRNA upstream 936998 19586528 ~ 19586793 (+) True G42054
TU52321 lncRNA upstream 1455581 19066973 ~ 19068210 (+) True G41990
TU52295 lncRNA upstream 1549429 18969911 ~ 18974362 (+) False AMCG00013068
TU52537 lncRNA downstream 16937 20551260 ~ 20551817 (+) True G42172
TU52549 lncRNA downstream 92771 20627094 ~ 20627334 (+) True G42177
TU52658 lncRNA downstream 305266 20839589 ~ 20840560 (+) True G42269
TU52670 lncRNA downstream 355352 20889675 ~ 20890332 (+) True G42277
TU52751 lncRNA downstream 722262 21256585 ~ 21259588 (+) True G42330
AMCG00013086 mRNA upstream 10265 20512716 ~ 20513526 (+) True AMCG00013086
AMCG00013087 mRNA upstream 21450 20485023 ~ 20502341 (+) True AMCG00013087
AMCG00013088 mRNA upstream 120690 20398609 ~ 20403101 (+) True AMCG00013088
AMCG00013082 mRNA upstream 265157 20257660 ~ 20258634 (+) True AMCG00013082
AMCG00013079 mRNA upstream 443785 20034217 ~ 20080006 (+) True AMCG00013079
AMCG00013092 mRNA downstream 23905 20558228 ~ 20565344 (+) True AMCG00013092
AMCG00013093 mRNA downstream 32824 20567147 ~ 20625298 (+) True AMCG00013093
AMCG00013091 mRNA downstream 107369 20641692 ~ 20650263 (+) True AMCG00013091
AMCG00013099 mRNA downstream 226543 20760866 ~ 20768593 (+) True AMCG00013099
AMCG00013098 mRNA downstream 238905 20773228 ~ 20775301 (+) True AMCG00013098
TU52302 other upstream 1494513 19025561 ~ 19029278 (+) True G41978
TU51470 other upstream 4893164 15620785 ~ 15630627 (+) False AMCG00012982
TU51437 other upstream 5044425 15477179 ~ 15479366 (+) True G41264
TU51320 other upstream 5387062 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 5890378 14632357 ~ 14633413 (+) True G41059
TU52747 other downstream 735352 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 836520 21370843 ~ 21418787 (+) True AMCG00013126
TU52772 other downstream 892337 21426660 ~ 21486808 (+) True G42344
TU52771 other downstream 950584 21484907 ~ 21486808 (+) False G42344
TU52773 other downstream 950998 21485321 ~ 21486808 (+) False G42344

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU257536 True 274 lncRNA 0.50 1 NC_048567.1 12525955 ~ 12526228 (-)