RNA id: AMCG00013091


Basic Information

Item Value
RNA id AMCG00013091
length 5516
RNA type mRNA
GC content 0.40
exon number 3
gene id AMCG00013091
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 20641692 ~ 20650263 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGTGAAGGCTGTTTGATAACTATTTCTTCATTCTCAGATATCACTTTGATTTAGCTATGTCTCATTTCTGAACCCAGGCAGGCATCAGCAATTAGGTCTCTGTGTTTCGTGTCTCAACAGTAAGACCATCCAGAAGATCGCCAGCCCCTGCGTCCGCCCTGCTCTGTGAGAGGCAGAATGAGTTCCTCCCCCCTGGTCTCCCGAGCCCCCATAGACATCCTGGAGGAACTGCAGCACATTGCTGCCCAGAATCTGGAGAAACTGGATGTGGGAAAATACTATGAAGTCATCCGGGAGCTGGGGAAGGGCACATATGGCAAGGTGGACCTGGTCATCCACAAAATCAGAGGCACCAAGATGGCCCTGAAATTCCTCCGAAAGAAAACCACCAAGCTCAAGAGTTTTCTACGAGAGTACAGTATCTCgctcttcctgtctccctgtcccTTTATCATCAACATGTTTGGGATTTCCTTTGAGACCGATGAGTACTATGTATTTGCACAGGAGTATGCCCTGGCTGGAGACCTGTTTGACATCATTCCACCACAGGTGGGTCTTCCAGAGACAGTAGCCAAGCGCTGCGTCCACCAGGTTGCTCTTGCCCTAGACTACCTGCATTGTAAGAAACTGGTCCACCGAGACATTAAACCAGAAAACATTCTGATTTTCGACAAGGAGTGCCGCAAAGTCAAACTGTCCGACTTCGGGATGACCCGGAGGGCTGGGTCGCCGGTGAAGAGAGTGAGTGGGACAATCCCATACACGGCCCCAGAGCTGTGCGACGCTTCCAAGCACGATGGCTTCTGCGTGGACTACAGCACTGACGTCTGGGCCTTCGGGGTGCTCCTCTTCTGCATGCTAACAGGGAACTTCCCCTGGGAGAAGGCCCTGCCCTCCGACACCTTCTACGAGGAGTTTGTCAGGTGGCAGAGACGCAGAACTGGCACCATCCCGTCTCAGTGGCGCCGCTTCACCGACGAGGCCCTGCGGATGTTCAGGAAGCTGCTGTCCATTGAGCAGGAGAGACGCTGCACCGTCAAGGAGGTCTTCGGGTACTTTAGCCACTGCTGGATGCTGGACAACGAGAACGGGAACCACCTGGCTGAAATCAGCTCCTCGTCCTCCGAAGAGGACCTGGTCGACCGCATGAAGCAGCAAACCCTGTCGCCCGTGTGCGGCATAGGGAAAAACAGCATCATGGTGGAGACTGCGCCACATTTCTCCTCCATGTCGACGGTCAGCTCCCTGTCCTCCACGAACAGCTACGAGCGTGTCTCTCGAGAGACCACCAGCAGCAGGATTTTGGTGGCCACTCCCATTGAAATCTGTGTGTAGAAGCCCCTtcccactgttttttttttcttttttttcctctgcaaGACTGACCCTTAAGGTTTTACAGAGAAGGGGCCCTCCGGAATCTCGCTGTGAAAAAGTGGAAGTTGTTGGTAGGTGGCGTTCATTTTAGCTTCCATGCCACCAGAGGTGTGCCGATTTGAAATGGgtgcaaccaaaaaaaacagcattgacaagaaaagcaaacaaacaaaacgatgGAGAACATCTCAAAGGGCCTGCATCTGAAGGTTTTGAAAACATATCCCTTATGACGATTCTGACCCTTGTACCACCAACCCAGCTTCCTCTGTCTGAATGATTACCTCACGAAGAGATTTCTCCGAATGATCAGCTATATATTCGTCAcagttttcatgcatttcacCACAAATGGtcagactgaaaacaaacaaatgaacgaaacagcaacaacataaaaaacaccATAAGAGCAAGTTTAGTTGTGTTGATAAGTGGTATTGTTACAGTTGACCAAAATCTAATTTCCTAAAGCAATATGTTAAACGTTTtcctgcaaaaaagaaaaaaaaagaatgagagCACTGAGGCGGAAGCCAACTTTTGAGCGGTTCTTGAAGGTGGAATGAGAATTTTGCACAGAATGAAGAgctaatgaaaaagaaacattttacttttcgtttttttattcttgaagCTGTTGGAAATGCAGcactttaaagaaaacaacattatattgtCGAATGTTTCCAGGAGTGAACTGCAGCTGTGATGTTTACTGTCAATGCAATGTGAATTATAGTATTATGTACGTGTGTATGTTGGTATGTGCGTATGAATTGAACTTTCACTAGTGTAGATAACAGGTTTTGGcctttaatttacttaatttatttgaatcctGGATtctcagaaatatatttttgctatttattttgtaaggtaTATTTAGTGCCAGctgtttgacttttttgttttaatattatggATTGCTAACGGTCTAGTGCCAAACACAGTACGACATTGTGCAGCCATCTAAAATGGGAAAATGCTTGCGTTTCTACCCCTTACCAAAGGTACTGATCATTTTAACCTCAAGGCAACAATGTACTTCtgttgaacacattttttttctgacctTGTTGATCATAAAAGCCAGCATCTGCTCTAGGAGTGATATTTATTCAGTCGATAGGTTttactgtacagtatttatCCTAGGTTTTTTTCTCGTTGACTGGAACAGGAATGTTGCAGAGCTAGAATGTATCAGGGGCTTGTATGCAATAAATGTGCATACATCTGAAAAGCCAGATGTCTCGAactgataaaaatatatagtcaaGAAACACAGCCAGGTTGCAGATGATTGCAAattatgtgttaaaaacaaatatgtccgGCGAAGCGATTGTCTCTTGTGAGATCAGAAAGGTAATGGTATGTATTGCTCCTGATGCCTTCATAACTGAAAACTTGAAAAAATCTAAACTCAGTCAATGCACTGACTTTAGTACAACTGTAAAATATGCATAGAGGTATCTGATGTCTCCATACGTATGAACACCACCACATGTATCAGACATATCAGGCAACTATATGGGTTTATATAGAATAGCTACCTTTCGTTTCAGTATCCATCTGAATAACAAGGCACGGTCAGATATTATAAAGTATTCTAAACACATACACTGCTATGCTTTAAAgggaaataattgaaatgtataaccTGCGGTAGACATCCACTTTATCCTCCTCCACTTTGATTCTCTAAGGGCTCTGACATTGTATTGGTGAGAACAATCAGATTTTCTTCCGGTAGGGCGTCTATCACATCTTCGGTCTTTGTTGgcttttcttttgtgtcttGCTAGTTGGTCTCTTGTTATGTCTTTACCTGTAGGCTTTTGAGATTAGACTGTGCACTGGTGGTTTTGAAGGGAGGTTCGCAACGACAGTGAATTCCATTTCTGCAGCTGTGCTTTTTAATACCTCATCTATACCACAGTGAAAATTAAACCCCCTCTTGCAAAACATGGGAAAAGGAGAATCTAATCTGTTTTAGCAGATCGCAATGCATTGGGTGACCAAATGGATCCTCATATATTGTTGCATGTGTCCTTAATGGAATTCCAGAAATATAACCACTGTATTATGCAATAGTTTGAGCTTCTTTTCACCCGATAGAAGATTTTGAACTGTAATACTTCCTCTCTGCCTTCTATCAATTAGCTCACCCACGGCTGTAGTTTCAAAATGTTACGCTGTGTGGAAAATGGACGGTTCAGTGAGGTGAAATGTTCTGAGTATGCTTTCAAAAAGTTCAAACTTATCAAGCTCATTGAAATGTAAGGGATTTTCTTGGTGGAGAATTTATGTATGCCTGCGACTggaaatctatacattttttcGCATTTTCCGGcttctgcctttttatttttttgccgaAGCGAAAGAGTGTTTAGGGTTAGGTTTGAAAGACCTGAAAAGCATCAATGCTTGATGACATGCTTTTTTGAAGTGTAGGTACTGGATGCCTCCGACAAAACCATTTTCCAACAGTGCTCTTTCTCTAAATTGTCTCCTTGTAATTTTGGGGTATTAATGTTGTTTCCAAATCAAATACCTTATTAAATACTTTGAGATATGAGTATATTATAATGGGAGCATATCAACTTATGTTGTAATCTAAATAATGGAAATGGGAAATCTAAACAGCTGTGACTGAGGAAATAGAGATTCTGGGTTAGCCTAGAATGCAGCATAGGCCCTGGAATCAACATTACAATCTTCTGGGACTGAAACGAGACCATTTTTACTCGATATTAGGAAGTTGCATTCAAAGTCAGGGAAATCACCTCATGAGTACTTTGTCTGAATGGATTATCCTTttcaaacaacacttttttcaaCCTTCAGGCGAGCTGCTATACAGACCCGTTTTCCAGTTGTTTTGTCAACCTTTGGAAACTGGGTCTGTGTTGGAGTTTGCAAAGGCTTTGCCTGAAGGAATGGTTTAGTGTTTTTTCAGATTATGTTTACTTACATAATATCAGTCAACATGGCTATACAGGCTGATAAACTAACAGGCTGTacttttctcccttttttctttcaactaAAACATTCacccaatttttattttaatgtggcTGGTGTACAGTTTACTGTTTTCCTGATGCTTTAGTGTGCACTCACTAAACTACCCAGTGTTTAAATAGTGACATATCTTTGACAAAAGGGACTTTTGGTTGGGGGtgataaatgcattttccattaTGGCTGTCTAATATCtgaacattttactgcattttggTTTACTAGTTCTGTGACATGCATACATTGTAGACCAATTGGTTAATAAGAGAGTTATGTACATTTACTCttgatttatgcatttatttaaagttcCACATTTGGCAACATTATTGCaagattataatttaattgaatacatttgttttacgcCAATAAGGCCAGAAGAGATGTATGaaagggcattttttttttaaatggcatggAGAATTTTAAACATATCTTAACAATGAAAATTGAACTGTATTTATTAGAGGTATGAAAAAGAtagttttattgtgaaattttGCTGTAGCACAATTTCTTGCATAATGCTCCAGAGTGCAGATTGTCATTATGACTTCTTGAAACTAACTAGggctaaaaaaatattaaaaaattaatgaataatgttaatttttattttgtgtgctgtatttgtatatactgttgtatttgtattattgttaaacCAAATCAAGGGAGAATATGTAGAAAAATAGCTGATGTTGATTGTGAAGTGTTATTAACTGCTTTCGATAAAGCAACCACTGACTAATTAAAGTGGGTTTAATAGGGAGACTGCCTCTTGTTCCTACATTTCAATGTGATATAACCAATATTCCCTGTAGTGATGTACaaactgtgttttcttttcctttccattttattttttaagctggAAAGAGGTTCTGACGGATTTAACTTCCAAGGGGAAATCTTTCAATGTGTTTcaagactgaaaatgtaaacaaaacaaattgcgTTAAGGGATGGCAAAAGCAAATCACAATTTTACTTCAATGGATAGCAGAATAAATTACCTCCTGAAAAGAGTGACCTTTGCtttgttaaaggaaaaaactaaaaaagggaaaaaaaaaaaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08858 SBK; serine/threonine-protein kinase SBK

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52549 lncRNA upstream 14358 20627094 ~ 20627334 (+) True G42177
TU52537 lncRNA upstream 89875 20551260 ~ 20551817 (+) True G42172
TU52478 lncRNA upstream 249083 20387684 ~ 20392609 (+) True G42127
TU52418 lncRNA upstream 653832 19986178 ~ 19987860 (+) True G42077
TU52389 lncRNA upstream 1054899 19586528 ~ 19586793 (+) True G42054
TU52658 lncRNA downstream 189326 20839589 ~ 20840560 (+) True G42269
TU52670 lncRNA downstream 239412 20889675 ~ 20890332 (+) True G42277
TU52751 lncRNA downstream 606322 21256585 ~ 21259588 (+) True G42330
TU52752 lncRNA downstream 606322 21256585 ~ 21304213 (+) False G42330
TU52762 lncRNA downstream 650345 21300608 ~ 21471560 (+) False AMCG00013118
AMCG00013093 mRNA upstream 16394 20567147 ~ 20625298 (+) True AMCG00013093
AMCG00013092 mRNA upstream 76348 20558228 ~ 20565344 (+) True AMCG00013092
AMCG00013089 mRNA upstream 107369 20523791 ~ 20534323 (+) True AMCG00013089
AMCG00013086 mRNA upstream 128166 20512716 ~ 20513526 (+) True AMCG00013086
AMCG00013087 mRNA upstream 139351 20485023 ~ 20502341 (+) True AMCG00013087
AMCG00013099 mRNA downstream 110603 20760866 ~ 20768593 (+) True AMCG00013099
AMCG00013098 mRNA downstream 122965 20773228 ~ 20775301 (+) True AMCG00013098
AMCG00013101 mRNA downstream 167258 20817521 ~ 20830999 (+) True AMCG00013101
AMCG00013100 mRNA downstream 310158 20960421 ~ 20980242 (+) True AMCG00013100
AMCG00013104 mRNA downstream 338590 20988853 ~ 20999310 (+) True AMCG00013104
TU52302 other upstream 1612414 19025561 ~ 19029278 (+) True G41978
TU51470 other upstream 5011065 15620785 ~ 15630627 (+) False AMCG00012982
TU51437 other upstream 5162326 15477179 ~ 15479366 (+) True G41264
TU51320 other upstream 5504963 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 6008279 14632357 ~ 14633413 (+) True G41059
TU52747 other downstream 619412 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 720580 21370843 ~ 21418787 (+) True AMCG00013126
TU52772 other downstream 776397 21426660 ~ 21486808 (+) True G42344
TU52771 other downstream 834644 21484907 ~ 21486808 (+) False G42344
TU52773 other downstream 835058 21485321 ~ 21486808 (+) False G42344

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00009828 True 2515 mRNA 0.45 4 NC_007123.7 549599 ~ 558201 (-)
grasscarp (Ctenopharyngodon idella) CI01000112_02060950_02068272.mRNA True 1791 mRNA 0.50 3 CI01000112 2060721 ~ 2068604 (+)