RNA id: AMCG00013093


Basic Information

Item Value
RNA id AMCG00013093
length 9604
RNA type mRNA
GC content 0.48
exon number 47
gene id AMCG00013093
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 20567147 ~ 20625298 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aGCCAAGTGCTGGAAAAGCTTAAGGAGCAACTGTGCTGCCTGCTTCAGCTGTACCCCTGCGGCATTCCTCAGGACAAAGTATGCGTCTTTTACAGGCGAGTGTTTAAGCAGTCCCTCAAACTGAAGACATACGGTTTTGTATCCCTGAGGGAAATGGTGGCACAGCTGACGGATATCTGGGTGGTCGTCCCCACTGATAATGGACCTCTTCTGAAAGCGACCGCCACCGCAGCAGCCAAGAATGTAGACGCCGAACCCTGTGCTTCACAAACAGTGCAGCCTCCAGCCGAGGATGCCACAGAAGACTGTTCTATAGAGGCTCTGGGAGAACTGATTCAGATGTTATGTGAGCAGCATCCTCAAGGATATCCTGTGAATAAGATCAGGGAAACCTTTTTCCACAAGTACAAAAAGACCCTTGCTGTGGGAAAGTTTGGCTTCAGAACATTACAATCTTTATTGAAGTCAATGAGCGACATAGTTGATGTGGTCCCAGGGCCTGATGGCGATGTCGTCAATAGAAAAACCACCAGTAAAAAGTCAGAAGTGAAGAGGTCCAGAGATGTTTCATGTATCGGTGCATGTTCTACAGATTCCCCTTCTCTGCCAGTATTAACCTCGCCTGCCAAGTCTAAAGATGAACTCAGAAAAACGTTATGTCAAGAGATCGTGTTCATGCTGCAGGGTTCTCCGGAAGGCATAGAACTCTCCAAGGTGTGCAGGACGTACAAAAAACTGTACCAACGGAAGCTGGTTTGGAAAGACTATGGCATGAAAGGTGTGAAGGACTTACTACTAGTGTTGGGTGATGTGGTCCAAGTGGAAGGTCGGGATGAGACAAGCATGCATGCTAAACACTCAACTTTAAGACTTGCAGATAGCTTTGTGCCGCTACTGGAGCCCCAGCCCAGACTTTCTTCAAAGAGGCATTCTGCAgTCAACAAGATGGAGAAGGCTCACAGGGATGTTCTTGAACTTTTGAAGCTGCATCCTGAAGGAATTCCCCTCAAGCAACTGGCCGTTGCCTACAGTCAGAGCTACAAGAGAAACCTCACTGTGTCCTCATTTGGGTTTTCTTCCCTGAGCGAGTTCATAGACTCTCTGAAGGATGAGCTTTCTGTGGAAGGGGATGTGGTCTTTTACGGTTTATACCACAAGCCTAGCCATGGTACCGCAGTACCCACAGCTCCGAGGCCACTAATGCCCCCAGAAACAACAACGCCTGGGGCAAGGCTGCCACTTCAGTTCCTGGATGGCAAGGCCAAACCCGCAGCGCTGGGAGCAAAGCTGACCAAAAGGGAGCAGAAGAAGCTGCAGCAAGAGGCCCTGAAGAAAGACTGGACTGCGCCGGTGTTCAAAGAAGCCTATAATTCCCAGGTTAGGGAGGTCCACAATTCTAACATGCAGGCCATCGAGGTCCTGGACGATGACAAAGTGGGGAGGTCTCGCAGGAATATCAGCGTAGAAGAGGTGGACAGTCTGGCCGAGGACTACATCCGTGCCATCGCAGCAGAGGGAGAGCTGGTCACTATAGAAAAGGTTGAGGCCCGAATCTGCCGCCACTTACGCATTCAGTCCCTGCAAAGTGTCAGAATTAACAGACGGCAAATTTCAACTTTAACGGAACTCTGCCGAACCCTGAGGgaaatcaacatttttattgAGGCCACTGAAGCAGTACGGACTGTGTGCACTCTCTACGAGCTTGGCCAGTGCATTGCGGCCCTGAAAAACAAGAGGCATTTTGAGGAGCTCAACCTCGGGCCCCTGTGCAAGATACCATTGATccacaaaatgtttaaagtggTCAGCAGCACAAAGGACGAGGACATTCATGAGATTGAAACTGTGGATATTCTAAAGAGTCTGCGAGTGTTCATGAAACAGTGCGGCCCTAGCCGCGGCAAGGTGGACCTGGCCGAGTTCATGAAATACCTTGCTGATCAGTACAACTGCGAATCCCCCTGGGACCTGGGGATTCGAATCCAGAGCATCGCACTGTCCATTGCGACACTGCGGAAAGCTGTAAATTCTGAACATGCATCAATGGACAAAGCCAGGACCACCATTCAAAGGGAAATAGAGGAGGAAGTGGACAGCCGAATGAGGAAGATCAAGAAGAGCCTCATGGAACCAGCTCAGGGGAATGTGCCGTATTCCTCGGCTGGCAGCAAGGAGCTGCGGAAGAAATACGCATTCCTCACGGCAGCAGAGGCTGTCCTGGAGGTCTTCAAGAATGCAGATGGGGTCTTCAGTGCCAGAATGACGAAGcaTGTCCAGGATTTTTTGGTCCGTGTGTCTGGAGATCGGTTGGCGACAGCTCTATTTCAGCTCGCCATTTGCTGTGGCTCACTTGAGGTCCCTCATGACTTAGTAGCCAAAGAAAAGACCCGTAAGCCTGCAGAGGACAAAGACAAAAAGGAGTGCAAAAACACTGTACAGCCACCGAGTGAGGCTGCAGTGAGGCAGTACTTCCAAGACTGTCTTTCCAACACCAGTGGCATCCTCACCCTGCCTTTTATGTGCaagctggagaagaaaataGCTGAACATTTCAAGTTTAAAGAGTTTGCTTGTCTGGAACATGGCACCTTTCTGGAATTTTTGaTTCTGCAGGATGTTGGTGGGGGGGCCTTAGCACTGAGCAACCAGGAATCAAGGAGATGTGTATTTAGACCAAACCAACAGGATGTCTATGAGTTTATCACGCAGTGTGGGACAGAAGACCAAGACAGACTTCCGGTTATTGAATCAGCTTTAAGGAATCACTACAAAGTGAAAGACAGTCGAGAACTGGGCTATGGACCATTGTCTACACTGGTTGGCTTTGTTCAGCGACAGAAGCAATTGATTGACAGCCGTCACTCAAACCAAGCCAGTCTTGTCCGTTATGAAGCCCCCCTGTTTGCCAGAGACACAAGGAGTTGCTTGGCAGAGACGAGTGACACGGTAGGTCTGCTGGGACCGGTCGGCAAAGACGCAGCTCTGGCCTGCTTGCTCAACGCCCCTCTGTTGGAGGACCTGTCTGAGTGGTCGCAGTGGGAGCTGGTCTTTGAGCCCCAGCATGGGGGCCTGAAGGACTTCATCGAGAGGaactgtggaaagaaaataacCCAAGTGGGCAGAGAATGCATAACAGTTATTGGTGACCTTGTGGCCCTAGAGGTCAAACCTGGAGTTTTGCTCAGGGTCACAACCTCCACCAGCGATAAACTGTTTGCTGAGGCAGCAATGGCCCTGGACCCCATCGGTACTGCTGGACATTTGGTGTCTTTAGTGGTGGCTGATGGCATATTGCATGCTCCTATAGCCCTGCTGGCCAATCACATTGAGAGCTCTCTAGCAGCAGCTGTAGCCCAGGAAGGTTTTTCACTGAATGAAGAAGCAGCTGCACTAATTAAAACTGCGAAGTTCTTACTTGACTGTCTTATCCGAATACCCACAAGAATTTGCAAGTCCCTAATGCAGCAGGTGTTCCTTCAACCTTTTTCCAAAGTTCTGGGCCAAGCCAAGTCCAAGAATGTTCTTTTGCAGTCTGCAAAGTTAGACAATCGCTACACCAGCAGGCTGCACCAGATTGGCCTTCTCCTGGGCTTGACAGAGTGGGTTAAAGACTTTCAGACAAAACTGAGTCCACCCAAGCTGGCATTTGTCCCATCAAAGATTTCCAAGCTCAGGTCAGCTGACTCGGTATCCATGAGCAGCAGGTCTTCAGCAGTAGGATTGAGCAGTGAAGATGAGGAGATCTTGGCAGGCTCTGGGCCAGAGTCTGAATCAGAGTCTGAGGATGAATCCTCATTGCTGAGCTCAGatgtTGAGGAGGAGAAGTTTGAACTGGCTTTAGAAGAAAACCGCAAGCCACCCAGTGAATCTGAGAGCCAAGACCTCAGCTCTGAGGGTGTGGAGGAAGAGCAGGCTGAGATAGTCAATGAGGAGAGTGAAGAACTCTCCAAGACCCTTGCTGAAGAAAGAGTAAACCAGTGCAAAGCAGTCATTGATGACATCAGgAAAAATGAATTTGGTATTGGTGTTGACTTGAGCGAAGAGGGGAGAAACTTAATGAAGGTCCACCAAGAGAGACTGGGCCGGAGTCTGGACAGGCTGTCCACCGAGCTGTACAGCAaagacacacattttgttttggagcTCATCCAGAACGCAGACGACAACATCTATCCCTCGAATGGAGACGTGCTGCCCGCTCTGGTCTTTGTGGTGGAGAGAGACTGCATCTCCATCGTCAACAACGAGTGCGGCTTCGAGGAGAAGAATATCCGTGCCATCTGCGATGTGGGAAGAAGCACAAAGGGAAAGCACAAATATGGCTACATAGGACAAAAGGGCATTGGCTTTAAGTCTGTGTTCAAAGTGACGGACTGCCCTGAGATTCACTccaattgttttcacatttgctTTGACAAGAACAGCGGCCCTATGGGATACATTCTTCCACACTGGCTTGAGAAGGAGAGATTTCTAAATGTCAATATGGATGATCTCAAATTAAACAGCTGGACCACAAAGATAATCCTGCCCCTTCGAACTGAGAGCTACCAGACACGCAACCTTTTCCATGATGTTCATCCTTCACTGCTTTTGTTTCTCCACCGCCTTCGTTCCATCACCATTGTCGATGAGAGCGAGAATAGGCTCATATCAATGACTCGTAAAGATCTGAGTGACAGTATCCTGGAAGTGCATCACACAGATGGCATGGAGCGCTGGCTGGTGATTAAAGATAATGTGGAGTCCACTGAACTGGCACTGGCCTTTAAGCTGACTGATGCAGATACTTACCATGGGATGGTGCTCCAGCCAGAAAAGCAGCCAGTCTTTGCCTTTTTGCCCTTGAGAAGCTTTGGGTTTCGCTTCATCATCCAAGCCGACTTTGACATCCCATCCTCTCGGGAAGACGTTGACCGTGACAGCCCATGGAACCAGTGGCTTCGTGCCGAAATCCCACAGCTTTTCCTTCATGCCATGAACATCTTCTCgGAACATCCAGAATTCACTGGCCTGCAAGGCCTCTGTCAGTTCTTGCAGTTTATTCCCCTGCCCGATGAAATCCTTGATTTCTTCAATCCTGTAGCTGGAAAGATCATACAACTCCTCAAGGGAAGGCCATGCTTGCCCACAAAGGAGGATAAAGATGGCAATGTGGAGTTCAAGCTGCCCTCCCAGATTGCTGTGTCTCAGGATATGCTGATCCAGGAGGTGATTGGGCCGGAGCTGCTTGAAAGGCACCTCAACCTGTCCTACCTGAACCCTGCTGTGCAGTCCTGCCTGCCCGCATCCCTCATCGCAGCCCTGGGAGTCCACCGCCTCCGGGGCTCTGACATCACTGCAGTCACCTGTGCCATGGCCAAAGAGATCCTTAGCCACAATGTCACGCTTGATGATGAAGGTCTCCGGAAGGTTGCCAAACTGCTGGTGTGTAACTTCCGTGCTCTGGATCAGGAATATGGAGAGACCGATGCCTTGCTACAGGTCCTCAGAGAAATTCCCATAATCCCCTTGGCTGATGGCCGCACGGTTGCACTGAATTTAGAGGGCGTCTTCTTCCCTCTGAGTGACACCCAGAATCTTCAAACAGGCATGGAAGCCATTTATAAGGATCTAAATACAGTAAACCCTAGGCTACTCAAGTGCCTTGATCCACTAGGTAACTCCCAAGTGAGAGAGCTACTGAAGAAAATGGAGGTGCATGAGATGGAACCAGAGAAAGTAATCCGCGAGCACATTTACCCCATTCTGAAGAACGGCGGGTGGAAGgtCAAACCAAAGGACATTGTCATCAGCTACCTTGTGTTCATCAAGCAACATTCCCAAAATCAGGACTACAGTAAATTGAATGCAGCAGTCCCTGTCCATACGAACAAAGGGTTTGTGTGTCCCAGAGAATGCAAGGTGCAATTTGCAAAGGAGTATGGGAACATTGACCTTCCAACCACACTCCCAGGTGTTGACTGGGTTATCTTGGACACCTGCTATTTAAAAGCAGACATGGATGTGAATGGCTGGAGAGAGTTCTTCATTGTTCTCGGAGTTCAGGACCTGCTTATCTTCAAAAAGGAGAAGCGATCCATGTCACAGAAGGAGTTGGCCTCAAGCCCGTGGGCCCTGGATAGCGAGATCTGGCCAAGAACTGCCGATGGCTTGTACATCGTCGAAGATTACGAATGCGAGGAATTCCATACCCTCATTACAGTGGATCATCTCCCCGAGAATACGAAACTGGGCCAGAGACGAGAGCTCTTAAGTATGCTTGACAGGAACTGGGTTACTGGAGACAAGTATTCTCAGTACCAGAAGGCCCAGGTACTGGACAGCCAGGGAAGGAAGTTGAGAGACACCCAGTCCTCCTTTGCCTTCTATCTAACCAGCCTTCCATGGTTGCCAGCCTTTAAGACTGCGCAAGGGAACATGGAGAAGCGCACTGTGGAGTATTTGTGCCCCTGCAAAGTGTACCTCTATTCTAATGACATTTACAGGCTGTTAGGGATTCATGTCAGTTATGTCGACATGAAACCAAGTGACTTTTCCAGCTCAGTAGGGATGAAATATTCCATTTCTGTAGCAGAAGTGATCACACATTTGAAGTCGTGGTGCACAAAGCAATCAGACAGCTCCCCCGACGAAATTGAAGGAGCAGATtttacaacaactgtggagcatGTGTACAACGTCTATGCCTACCTCTACGAAAACTGCAATCGACAGCAACTGAAAATCTTATTTGAGGAAACGCCTGCTGTTTTCATAGACTATGAGAGGAAAGATGAATGGTGCTCTGGAAGGTTCTACTTCATGAAGGAAGTCTGCTGGAGTGATCCTACTGGCATGTTCCTGAGGTACAGAGAGCCAATTCGCCACCCAGATAGCGGTGTGCAGGCGCCTCGTGTCCTCGCTCCCTTTTACAACCAGTGGAAGGACATGAAAGAATTGTTCCTCAAGTGTTTAAATGTGGAGCCCAACCCTTCCATGAAGCAGTATGTAGACCTCCTGGAACTGATTTGCGAGACCTGGTCTCTGCCCACTCAAGAGCTACTGCAGGACGTCTCTGTAATTTATGCCAAACTGGCTGAGAAGTGCAAAATACCCGGAGAACAAGACAATGAATATCATATTAACACTGTGTATGGCACTTCACTTAAGGaaatgttggctgACAAGAAGGTCTTTCCCACCAAGGATAATTGCTGGGTCACTCTAGCTAGACGGCCTTTAATACCAGATAACAAGATACTGGAAAAGGTTTTCAAACCCTACAGTAAAGTGTGCCTGCTTAATCTCCCATCAGCTGACCTGAAACTTGCCCCCCAAGCCAAAACAGGCTATAACCAAGGGAAGcagatattaaaagaaaagcacatgacCTTCATTGAGAAAGACAGAGCGCTTTTCCTGGAGATCTTAGGGGTTAAGAAGCTCTCCCAGTGTGTTACCACAGAGGCCCAAACTGAAAATTACAGGCCCTGCCCCACCATGCAATGCCTGGTCCGGAAGGTGGTGCCCTACATCCAGAAGTTTCTCTACCACCACGAGGATTATGGGTACATTTACAATGACCTCAAGGAGAGCAACATCGCTGCACTGACCAAGGGGCTGTCTTTCGGTCAGGTTGGTAAACTGTACATACTGTATCGACTAAATTTGCCTGAGGAGGAGCCTTTGATCGAACAAGAAGATGTAATTTGCCTTTTGAAGGACAAAAAGGAGTTGTATATTCAAAAAGACCACATCTCATCCAAACTGGACATCTGCAGAGAAATTGTGAAGCTTTTCAGCCCAGAAGACAAGTGTGGGAAGGAGCTGGAACGCTTCTTGCAGGGATTGATGTCCTGCCTGGATGATGAGGCTGCCTTGAAGAGGTTCTTGAGTAAGGAGGACATCGAAGAACTTCCCAGCACTGAGGAGAAGTGGGAGGTCCCAGAACCAATTGAGATAAAGCCTGAACCCAGAGTGGTCCGTCTTGGGGAGCAGCAGGCCGACAGATCACTAAGCTTGAACGAGGACGAGAACAACGGTGCCacagaggagggagagaagacaCTAGCATGCTGGCCTCCAAAATCTTCCTTCCACGGAGCCACAAGCAACTACACAGGGCCGGCGGTGGAGAGGGTGATGAAGATGTGGCCTCCCCCAGCAGAGCCCGCTCCGTCAGACAATGACCCCACACCGAGTTTTAAAACTCACAGCGCAAGTGACAACCTGCCAGAAAGGAGAGAGCATGGGCACTCGAACCTCCAGGCTGAGAAGCCCAGTGGAAATGCCACTCCTCACTCTCAAGATCACAGCAATCCCTCTGGAGGACAGTGTCCCGTTGACACGCAGCCAAAGGACACTAACAGTCAATCAAGGCCTAATCCAGAAAGGCCAACTGAAAACACTGCTGACACTAATCCAACATCCTCAGACATTCTCCACACAAATGCCCAGCCACATATACCAGCAGGGCTGCCCACTATTTTCCAGGGCAGTGCCAGCATGCAACGACCACTCTATCCCCTAGACAGCCCCATCTGGGAAAAGGCACTGCCGCCCCAAGCTGTACTGGAGGACCTGACCATCAACTCCACCATCTCCATGCCACAGACAGTGGTCTTCAGTGAGGACTGCAGAGATACGATGGCTATTGGAGAATGGGGGGAGAGTCTGGTGTATGCTTTCTTAACAGGCTGGAAGGAGAACGGAAGCCCAGATGGGCCAAAAGAGATTGTTTGGTACAACCGGAACGGAGAGAGCGGACAGCCGTGTGATTTCAAAGTCACCTTTGGCACTGGAGACAACGGCTCCTCCGAGGTCTTCATAGAAGTCAAGGCGACCGTCAAGTCTGAGAGAAACTTTATACACTTGTCGGCAAATGAGCTCGACCTGGCACTGAAGGAAAGGGATAGATATCATATCTACAGAGTTTACAACGCCGGTGACTCGCAAAACGTTCGTCTCTGCAGGATTCGCAATTTAGCCCAGCACCTCCATGCCAAAGAGCTGgagctgtttctgtttgtgtagtTGTGCACTTTCATTTTACTGATAatgttctgtgtgttttaataccCGTGTCTCTTGTTTTTAATAGTATAGAAGGGGAAAACgttgaataattttaaatgttttaattcttttATATAATGTgggtttgttctgttttctaaaaggaaaacaaaaaaaagatttactACTTTTCTAATACATTGATTGAAGGTCAGCACTGATGTCCCTAACAACTGACTATTCATTAAATTGCTGCATAACAGCGTTCATCTTTGtaatacagtttttttattgactgatttgttgttttaatgtactACACCAAATagcacattttttgtaatataactATACCTTGTTCTAAGACTTAATGAAAAATTATCAGCTTCAACTACTACAAATTAATGACTCATTGTTCTCTAACCAGTATAATTAGAACTGCACAGATTAACTTGTTCAATCAGGGCAAGAATATTAAGAATAATttcagccatttaaaaaataccacTGGCCTTCATTCAACAGTATACTCATTTTTTATAGAAGGTGGGATTATATGTGACACAGGAACCACAGACTAAATAAACCCATTTCCTCCCAGCTG

Function

GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52537 lncRNA upstream 15330 20551260 ~ 20551817 (+) True G42172
TU52478 lncRNA upstream 174538 20387684 ~ 20392609 (+) True G42127
TU52418 lncRNA upstream 579287 19986178 ~ 19987860 (+) True G42077
TU52389 lncRNA upstream 980354 19586528 ~ 19586793 (+) True G42054
TU52321 lncRNA upstream 1498937 19066973 ~ 19068210 (+) True G41990
TU52549 lncRNA downstream 1796 20627094 ~ 20627334 (+) True G42177
TU52658 lncRNA downstream 214291 20839589 ~ 20840560 (+) True G42269
TU52670 lncRNA downstream 264377 20889675 ~ 20890332 (+) True G42277
TU52751 lncRNA downstream 631287 21256585 ~ 21259588 (+) True G42330
TU52752 lncRNA downstream 631287 21256585 ~ 21304213 (+) False G42330
AMCG00013092 mRNA upstream 1803 20558228 ~ 20565344 (+) True AMCG00013092
AMCG00013089 mRNA upstream 32824 20523791 ~ 20534323 (+) True AMCG00013089
AMCG00013086 mRNA upstream 53621 20512716 ~ 20513526 (+) True AMCG00013086
AMCG00013087 mRNA upstream 64806 20485023 ~ 20502341 (+) True AMCG00013087
AMCG00013088 mRNA upstream 164046 20398609 ~ 20403101 (+) True AMCG00013088
AMCG00013091 mRNA downstream 16394 20641692 ~ 20650263 (+) True AMCG00013091
AMCG00013099 mRNA downstream 135568 20760866 ~ 20768593 (+) True AMCG00013099
AMCG00013098 mRNA downstream 147930 20773228 ~ 20775301 (+) True AMCG00013098
AMCG00013101 mRNA downstream 192223 20817521 ~ 20830999 (+) True AMCG00013101
AMCG00013100 mRNA downstream 335123 20960421 ~ 20980242 (+) True AMCG00013100
TU52302 other upstream 1537869 19025561 ~ 19029278 (+) True G41978
TU51470 other upstream 4936520 15620785 ~ 15630627 (+) False AMCG00012982
TU51437 other upstream 5087781 15477179 ~ 15479366 (+) True G41264
TU51320 other upstream 5430418 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 5933734 14632357 ~ 14633413 (+) True G41059
TU52747 other downstream 644377 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 745545 21370843 ~ 21418787 (+) True AMCG00013126
TU52772 other downstream 801362 21426660 ~ 21486808 (+) True G42344
TU52771 other downstream 859609 21484907 ~ 21486808 (+) False G42344
TU52773 other downstream 860023 21485321 ~ 21486808 (+) False G42344

Expression Profile