RNA id: AMCG00013094


Basic Information

Item Value
RNA id AMCG00013094
length 2839
RNA type mRNA
GC content 0.50
exon number 4
gene id AMCG00013094
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 20646613 ~ 20680608 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATTGATATGGAACCCCCAACTCCCAACCAGTCAGATGGTTTACATCCTCAACCAGACCTTGCCCCCTGCAGTCTCTCTACAGTCTATGACCTAACAAGGAAACGAAAGGAAAACCTGCTGAGAAACAATTCAGTGGAAACCATGCATGTCGTCAGCGCACCCAGCTGGTACATCAACCCGGGCAACAAGGGAATCTTCCAGGAGAACAACTCTGACCACACTGCCCACCAGAACGAAAAAATTCAGCCAGACGATGCCTTTTCGAATACTACGGTCACCCTGTCTTATGTGAGCAGGTCTCACGTGTTTACTTCCCAAGACTCCCTGTCGCAACTTCCACTGTGTGTGCCGTCTGTGAACAAAAAACTCTCCTGTCACTCCCCTCCATACAGCCCGGACATGGTCTCCTCCCAGTACGAGCCGGCAGCGAAAGAGAACTGGGAAGCCAACGAAGGCCTTTGTGTGGAGGTGGATCGCCCGTTTCTACAGAATAACACGAGACCTGGGGTGGCAGCACAGTCGGAACTGAACAGGCTAGAGGAGAGTGGTACCCAGGGTCCTCATCCAACTGAGAGCATAAAGGCAGCCTGTCTTATGGAGGAGGCTTTTGGGCAGAATGGGAAGTTGGTCACAAGTTCATGGGGTGCAGAGAAACCTGAGCTTGCAGAAAGCACACTCACTCCTGGAAGAAATGAGGGGAGCCATATGCAAAATGGTACTGACAGCTACTTCCAGGATACAGGACTGTGTGAGGAGAAAGCGATTGAGAGCCCCCCTGCGGGAAGCActgaggagggaaaaaaaacttgtgaCTCTGAGGTGCTGGTTGTGATTTCAAGAACCGAGGAACCTTTAGACTTACAGGACAGTCCCAGTAGTCGGAATGTGTTGTGCAGTCCTGCCAATGGGGGATATGATAGTCCTTTAGAAGAGAACTGGTCTCCTGCTACCTCACAGGACAAATTGGAAGAGATTTCCGTCTTCCCCCACACACTAAATTCTCCCAGTTTTGAGAATTCTTCATTAGATGAAGCTGCTGACACAACATTTGTTACAGTAGGAGAAGATGTTTTAGTTGATTCTGCTGTGACTGGATCTACTGTAACATGTCTTGAAGACACCAGTGCTTTGCAGGACAGCTGTAGCAAGGGCAGTGATGTAACGGAAGGGTTTGTCATTTGCAATGGAATACAAGTGTTGCCAACCAGCGCATCAGAGCCTCCTGTGGAATGGTCAGTCCCATGTGATGGCCTGTCTGAAGCATGTTCAGAAATCGAGGGAAAGGCATGTAACACCCAGGAAGCATCTGTTGATATCCTGCCAAATGGTAATGCTTTAACTGAGGAAAGAACTTTTGAAAGGAAGAAACTTCCTCCTCGTTCTAGGAGAGGAAGGAGATTAGAGGAGATTGTGCAGAACATCACCCCCACTAGGTATAGAGCTTCTGCTAATTTTCATTCCACTAAACTGTTTTCCGTTTCTGCAGCACAGGATGTAGGAACGCATCAGGAAGACCAGGTAAGTTTACACGAGGAAGTCTTGGAATCTGGGAGCAGCCAAGACAGCCAAGAGAAAGTATCTGGTTCAGAAGAAGAGCCCAGTTTAAAGGCAACAGTCTTGCAGACGGACAGTTCTGATGGTTCAGACGGGTCCAGAAGCAAGAAGTCTACCTCAGgtcaaaaaaacagaaatgtctcCCTGCACAGCAGTTCATCTCCCGAGTCCCCAGTGCTCACACCTAAATGCGTGAAGAAAAGGCAGCAACTTGATGCAAGTCCACCAAAATGCTCCCCGGAAAAAAAGAACCTCAGAGCCTCGTCCAAGCTGAAATTGTGTCAGAAGAGCCCCACAAAGCAGCCAAAAATTTCCCCGGGCAGCACAAAAGCAGCCACCGGAAAGAAAACGCGGACCACCAAACGAAAGCGAAAGAAACGCAAAGTGGAGCAGTCCTCTCCGTTTGCACCGAACGAGCCTGAAATCAAACTCAAGTATGTGAATTTTAAAGAGGAGAAAAGGGACAGTAAAGTGGACAGCTTCTCCCCTTACGTCCGGCTGGAGTTAAAGGAATACGCCACTTGCACCGTTATCAACTACCCAGAGGAGGAAAAGGCACGACTTAAGAATGGAAAGGCCCAGGTTGGCCCAGCATTTGCAACTGGGTCTGTTCCCACAACCTCTTGCCTGCTGCCCGGACGCTTAAACACCGAGAGCAAGCGGCGCGGCCACCTCATCTGCTGCCTCTGTGGCCGGTCAGCCAACACCATGGACCTGGGAGATCTGCATGGACCCTACTATCCCAAAGGATTCAAACCTTCCCCCAAACGACATGCAGATGTGCAGAGTTCGAAGGAAGAGGACTACAGTGACTCTGACTCATCCTGTAGCGGCAGAGGCAAAAAACTGAGCCAGGCCGGGCTGTCAGTGGAAGCCACAAGCAGGCCCGTCCGGCAGTGTCAGGCTGCCAAACGGGAGCCTTCTCTGCTGGGAATGGGCCACAGGTGGCCTAGTGACAGGGACTGCTTGCGGAGTCCCGTCGCAAAAAAACCAAAGACGGACTCCAGCGCAGAAGACTGGTTCAGCCCCCCCCTGGTTCCGTTGGATAGCTGTGAATACTGGGTGCATGAGGAGTGTGCCATCTGGTCCGCAGGCGTCTATCTAGTGCGAGGAAAGCTGTATGGATTAGAAGAAGGTGCAAAACTCGCGCAAGAAACGGTGTGTACCACATGCCATCGAACCGGTGCCACACTAGGCTGTTTCTTCAAGGCTTGTCCGAATAAATATCACTACACTTGTGCAGTTCAGTCAGttttttcctttaacaaaGCAAAGgaAAACGTT

Function

GO: NA

KEGG:

id description
K24769 TCF20; transcription factor 20

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52493 lncRNA downstream 241528 20401708 ~ 20405085 (-) True G42136
TU52419 lncRNA downstream 658878 19986243 ~ 19987735 (-) True G42078
TU52393 lncRNA downstream 869884 19776524 ~ 19776729 (-) True G42058
TU52391 lncRNA downstream 961955 19684436 ~ 19684658 (-) True G42056
TU52245 lncRNA downstream 1949006 18696820 ~ 18697607 (-) True G41925
TU52672 lncRNA upstream 209075 20889683 ~ 20890288 (-) True G42278
TU52673 lncRNA upstream 209075 20889683 ~ 20890288 (-) False G42278
TU52824 lncRNA upstream 513541 21194149 ~ 21195350 (-) True G42376
TU52826 lncRNA upstream 528657 21209265 ~ 21209649 (-) True G42378
TU52820 lncRNA upstream 606712 21287320 ~ 21310348 (-) True G42372
AMCG00013095 mRNA downstream 68136 20550867 ~ 20578477 (-) True AMCG00013095
AMCG00013090 mRNA downstream 107808 20533583 ~ 20538805 (-) False AMCG00013090
AMCG00013084 mRNA downstream 201219 20406557 ~ 20445394 (-) True AMCG00013084
AMCG00013085 mRNA downstream 248752 20393654 ~ 20397861 (-) True AMCG00013085
AMCG00013083 mRNA downstream 274409 20369146 ~ 20372204 (-) True AMCG00013083
AMCG00013096 mRNA upstream 4663 20685271 ~ 20734269 (-) True AMCG00013096
AMCG00013097 mRNA upstream 66881 20747489 ~ 20760002 (-) True AMCG00013097
AMCG00013103 mRNA upstream 161010 20841618 ~ 20854064 (-) True AMCG00013103
AMCG00013102 mRNA upstream 303428 20984036 ~ 20985885 (-) True AMCG00013102
AMCG00013106 mRNA upstream 398998 21079606 ~ 21096419 (-) True AMCG00013106
TU52536 other downstream 100802 20531194 ~ 20545811 (-) True AMCG00013090
TU52412 other downstream 663733 19980336 ~ 19982880 (-) True G42076
TU52331 other downstream 1575195 19068245 ~ 19071418 (-) True AMCG00013070
TU52316 other downstream 1623835 18977060 ~ 19022778 (-) False AMCG00013071
TU52315 other downstream 1647847 18977060 ~ 18998766 (-) True AMCG00013071
TU52810 other upstream 571499 21252107 ~ 21301421 (-) True G42366
TU52828 other upstream 625578 21306186 ~ 21307693 (-) False AMCG00013112
TU52819 other upstream 655609 21336217 ~ 21517177 (-) True G42371
TU52829 other upstream 656459 21337067 ~ 21375763 (-) True G42381
TU52823 other upstream 670052 21350660 ~ 21360107 (-) True G42375

Expression Profile