RNA id: AMCG00013097


Basic Information

Item Value
RNA id AMCG00013097
length 3347
RNA type mRNA
GC content 0.40
exon number 11
gene id AMCG00013097
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 20747489 ~ 20760002 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCGACTTTGAAGAGTTTGAGAAGCAGCTCAGCGAGAATCGACAGGaaagagaaaaagagcgGCACAAAAAAAGAAGCCGGAGCCGGTCACACAGCCGCAGTGAGAAGCACCGCAGCTGGAGCAAAGACCGGGCCAGCCACAGCCGGGACAAGAGGAGCCGCAGCCGAGACCGCAAGAGCAAGAGCAGGGACAGGAGGAGTGGATCCCAGGAGCACAAGAAACATAGCTACTCTCCACGCAGGACGCGGAAGAAACGAATGTGCAAATACTGGGATGTTCCCCCTCTGGGCTTTGAACACATAACACCGATGCAGTACAAAGCTATGCAAGCTGCTGGCCAAATCCCAACTTTAGCTCTGTTGGCGACATCCACAACGAGTGGAGTGGCCATAACGCCAACCCAAGTGCCAATAGTGGGCAGCCAGATGACCAGACAGGCCAGGCGTCTATACGTGGGCAATATTCCTTTTGGAGTCACTGAGGAGGCTATGGCGGATTTCTTCAACGCTCAAATGCGTCTTGCTGGCCTTTCGCAAGCTCCAAGCAACCCAGTCCTTGCAGTACAGATTAACCAGGATAAAAATTTTGCTTTCCTGGAATTTCGCTCAGTTGATGAGACCACACAGGCCATGGCTTTTGATGGGATAATATTCCAGGGGCAGTCATTAAAAATAAGGCGTCCGCACGATTATCGGCCTTTACCTGGTATTTCAGAGCAACCTTCTTTTCATGTCCCAGGTGTAGTTTCCACCGTGGTCCCGGATTCACCACACAAGCTCTTCATTGGAGGCTTGCCCAACTATCTCAATGATGATCAGGTAAAGGAACTCTTGACATCATTTGGCCCACTTAAGGCTTTCAACCTAGTGAAAGACAGCGCCACCTCTTTGTCTAAAGGTTATGCCTTTTGTGAATATGTTGATGTCAGTGTTACTGACCAGGCTGTGGCAGGACTGAATGGCATGCAGCTTGGCGACAAAAAGCTAATCGTTCAGCGGGCAAGTGTGGGGGCTAAAAATGCTAATCCTACCGCCATTATCGAGGCTCCGGTGACTCTGCAAGTGCCAGGGCTCCAGACACTGCAGAACACTGGGATTCCCACAGAGGTGCTGTGCCTGCTCAACATGGTGATGCCCGAGGAGCTGGTGGACGATGAAGACTACGAGGAGATACTGGAGGACATCCGCGAGGAGTGCTGCAAATACGGCAACGTGCGCTCCATTGAAATCCCACGCCCTGTGGACGGGCTGGAGGTGCCAGGTTGTGGCAAGATCTTTGTGGAGTATGTGTCTGCGTCTGACTGCCAGAAGGCCATGCAAGCGTTAACTGGACGCAAGTTTGCTAACAGGGTGGTTGTTACCAAATACTATGATCCAGATATGTACCACAGACATGAGTTTTGAATCCTGAAAGAGCAGATATACGGACTGTACAAAGTTCCCAACTCTTTTCCAAAGGGGGTTGAGCACTTCACCAGTTGTGTATAGTCATTTTCTTGTACAGTCTTCCGCTTTACTTGCAATACAGCATAGTACTTTTCTTATTTAGTTCTACAGATTTgaaaggggggaaaataaaagtatttttatgtacttttaCCATTCTTGTGTTAAATTTTAGCTCAGTTCTAGTTTGATAACCTTAATGTGAAGTGAATTACTTGTAGGGAATAGAATTGAATAACCTGCTAAAAgaaaatttaaattgtttttcaatgttGCAATAATAGGTTAATGTTTCTCAGGGTAGAATATAACATGGATATTCtcctttggaaaaaaaacattaccatAACCTTGCACAACCAGAGTGACTATCtttattaatgcaaatatttgttttaacaatgtaaaaatacaaattctaaaTCTCTGTCCAAGCCAAGCTAAAAACTgctgttgttttggttttatttttcatttttgttagaGCAGATAGAGCAGAAAGTTGATACTTTAGTTATTGAATGTATTCTGAGTACTCTGTTGAAAAGAGTGTGCTCCACCACTTTTAGTAATTTGACATTATATGTGCCAGTGCTAAATAAAATATCCATGTCAATTCAGTCCTTTTGTAGAATAAGAGGTAGGACCTTTTTATAGGTGCTTTGGAATAGGAAAAGTGTTAAATGCTAAACATACTCCTAGAGTGATTTGTTTATGAAGCagtatacatttgtatactCTGACCCAAATTCCAGACCTATTCTTTTACTCTTGAAAAACTGATTTTAGGATTAACTAATAAGGTGCAGTAAAACAGGcttcatttgtaattcatgCAAATTGTATTGACATGAATGTGTCCAGTTCTCCTGGAACATAAATAATTTTTATGTCAACATATTGAATCCATCAATTTTATAGCTTATGGGAGGATCTTCCTTAAAGCAAATGTACAATTGTCAGACATAaaggagtgtttttttgttgttgttgctgtttgttttttaagtgtggCCTGGTCAAAGTTAGATAAACGGTTATAAGACCAGGTCAGTATGTAAAGTCCTCAATGCATTAAGCCAAATAACATTTGCATGAAAAATCATGAATTGCTGTGATATTAGGGTCTTGCAGGTAAACCTTGACAAAAATACTGTTCAGATATGTGCAATATCTATCACTGACACTAGGGGCAATAGCTATCAAGTGGAGAATTCTTGAggaaaccttttttgtttttaatttatgaagaAAGCAGAGTTACTGAGAATGAATTTGTGGACAGTGCGTTACCTATTTAATAACAGCgtaaatgtttgtaaatatacagttttgAATGTGAGTGCATATCAACCGGTGTTTGGTTTTTCTAATTCCTAATTGCCACTGCCATGccttcaaataaattattgcatatttatgtctgtttatgctttcatttttcatttcttgcatCCATGGTGTACCTTGCCTATTTTTTCAAGTAATAGAAAATTGATGTAAATTCAGGAAATCTTCTTTGTCTTATTTCAGTGTGATGTGgtatgcagtgttttaattttttgtacttttgtggACTGATGTTTCaggtataaagaaaaataaatacatatgcttTAGTTGTTTCATTTTTACTCAGTGAcactatttaatttgtaaacaatatattataatgttcTGGAAAATTGAAGATTTTAACAATTTCAATAATTAAGATTAGAAATATTTGCATAGACACGGTCTTTAATGTTGGCATGCAGgcagtgtttaaaatatgtgGACATATAAGCCACTATCCATTGGAGGGAAATAAAGCTTTTGTTACAGTTAATGAGCCCTTACATCCATGATTGTTGCTTGAATAGAATTTAGTGTTCCAGACACTGATTGTTTGCCTG

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12837 U2AF2; splicing factor U2AF 65 kDa subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52621 lncRNA downstream 73261 20666345 ~ 20674228 (-) True G42242
TU52493 lncRNA downstream 342404 20401708 ~ 20405085 (-) True G42136
TU52419 lncRNA downstream 759754 19986243 ~ 19987735 (-) True G42078
TU52393 lncRNA downstream 970760 19776524 ~ 19776729 (-) True G42058
TU52391 lncRNA downstream 1062831 19684436 ~ 19684658 (-) True G42056
TU52672 lncRNA upstream 129681 20889683 ~ 20890288 (-) True G42278
TU52673 lncRNA upstream 129681 20889683 ~ 20890288 (-) False G42278
TU52824 lncRNA upstream 434147 21194149 ~ 21195350 (-) True G42376
TU52826 lncRNA upstream 449263 21209265 ~ 21209649 (-) True G42378
TU52820 lncRNA upstream 527318 21287320 ~ 21310348 (-) True G42372
AMCG00013096 mRNA downstream 13220 20685271 ~ 20734269 (-) True AMCG00013096
AMCG00013094 mRNA downstream 66881 20646613 ~ 20680608 (-) True AMCG00013094
AMCG00013095 mRNA downstream 169012 20550867 ~ 20578477 (-) True AMCG00013095
AMCG00013090 mRNA downstream 208684 20533583 ~ 20538805 (-) False AMCG00013090
AMCG00013084 mRNA downstream 302095 20406557 ~ 20445394 (-) True AMCG00013084
AMCG00013103 mRNA upstream 81616 20841618 ~ 20854064 (-) True AMCG00013103
AMCG00013102 mRNA upstream 224034 20984036 ~ 20985885 (-) True AMCG00013102
AMCG00013106 mRNA upstream 319604 21079606 ~ 21096419 (-) True AMCG00013106
AMCG00013114 mRNA upstream 488080 21248082 ~ 21263482 (-) True AMCG00013114
AMCG00013117 mRNA upstream 510347 21270349 ~ 21278662 (-) True AMCG00013117
TU52536 other downstream 201678 20531194 ~ 20545811 (-) True AMCG00013090
TU52412 other downstream 764609 19980336 ~ 19982880 (-) True G42076
TU52331 other downstream 1676071 19068245 ~ 19071418 (-) True AMCG00013070
TU52316 other downstream 1724711 18977060 ~ 19022778 (-) False AMCG00013071
TU52315 other downstream 1748723 18977060 ~ 18998766 (-) True AMCG00013071
TU52810 other upstream 492105 21252107 ~ 21301421 (-) True G42366
TU52828 other upstream 546184 21306186 ~ 21307693 (-) False AMCG00013112
TU52819 other upstream 576215 21336217 ~ 21517177 (-) True G42371
TU52829 other upstream 577065 21337067 ~ 21375763 (-) True G42381
TU52823 other upstream 590658 21350660 ~ 21360107 (-) True G42375

Expression Profile