RNA id: AMCG00013099


Basic Information

Item Value
RNA id AMCG00013099
length 2271
RNA type mRNA
GC content 0.42
exon number 7
gene id AMCG00013099
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 20760866 ~ 20768593 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTGCTCCAGCCGGCTGCTGTACAGACAGGGTCTGCGAATGGCCAGAGAGAAAAGCTTGTAACTGATTAACAAATTAACCCTGGAAAACAACAGCCTCGATCACTTCCAGCTTTAGCTTCTTACGCACACCGAGATGGGGATGATGTCTGTACTACTTTTCCCAGTGCTGGTGGTGCTTGTTGCTGGGATGTATTACCTCTACAATGAGATTGCCAAGTTCATGACCAAGTCAGTGGTGCGGAACAAAGTGGTTGTGATTACAGATGCAGTCTCTGGATTGGGAAAGGAGTGTTCCAGGGTTTTTCACATGGGAGGAGCCAGGCTTATCCTCTGTGGTAAAAGCTGGGAAAAGTTAGAAACTCTCTATGAGGCCCTTAACAGTGTCGCAGACCCCAGTGTGACCTTTACACCCAAGCTGGTCCTTCTAGACCTCAGTGACATTGGCAGCATCGCTGAGGTGACCAATGAAATCCTGGAGTGCTACGGCTGTGTAGATGTGCTAATCAGCAATGCCAGCTTGAAAGTCAAGGCACCTGTGCAGACACTGTCCCTAGACATGGATAGAAAGATCATGGATACAAATTACTTCGGGCCAATCACTTTAGCCAAAGGCCTGCTGCACTCCATGATCTCTAGAAGAACTGGCCACTTGTTGCTGGTGAACAGCATTCAGGGAAAACTGGCTGTTCCGTTCCGCACAGCTTaTGCTGCCTCCAAGCACGCTGCCCAGGCCTTCTTCGACTGCCTCCGAGCTGAAGTGGAGGAGTTTGGGATTTCGGTCAGCACTGTTAGCCCCACTTTCATCCGCTCTTTTCATCAGCAACCTGAGCCAGCCAATTGGGAGAAGTCCATCTGGAAATTCTTTTTCAGGAAGCTGGCACATGGTGTTCACCCAGTAGAGGTGGCAGATGAGATTCTGAGAACAGTGAgcaggaagaagaaggaggtgcTTATGGCCAACCCCATTCCCCGGGCAGCCCTGTACGTCAGGTCGCTGTTCCCAGGTCTGTTCTTTGCTGTGGTGGCGGCCGGTGTGAAGGACATAGCCATAGTAGAAGAGGAAACACAGTAGCAGAAGGAGCAGTGAAGACCAGCCAAAAGAGGGGGCTGTTTGGACATCTGCTTTTCCCGTTGTTTCACTTCTTGCTTCCTTATAGTATTTTTTCAGATGTGAGTCTCTGTTAATCTTTGTGCCTTTCTGCTTAGAATTGAATTGACAACTCTTAACCACCTATTCCACTAACAAACTGCTTGAGAAAAGGCTTTTTAAGGCTGAAAGGGACTGTGGTAAATGTTGCTGGTGTAGGAGATTCATGGAGAGGTGGGCTACAACATATTGTGACACACCATGTTGCTTTCAAATGCTACCaatggaacttttttttttactgttccTTTTTGTTTGAACTGACTCTGTCActtattttcttgtcatttgTTTAACCTTAAAAACATGGTATCCCAATATAACTTATAGCCACTGTCAACACTGGCCAATGCTTCccaaaaaaatgtgcatttctgattaaaacaaatcagcGTTCTTTTGgttaaatgctttttgaaaaagtaaaactcAAAAATACTTCCAGTTTAAACTCAGTCTGATTCTTTTTAAGTGTACCAACAGACTGTGTAGTAAGCCTGGTATTTAGTAATGCTTGTGGAACCCATTAGGATAAAAAGACGTGAGTTAAACTGATGGTGAGAGATCAAGATGTTTTTTGTAGCTCTCCGGTGATTGACTgatattgtcttgtttttttttttaatcgagGGGAGTACAGAATCTGCATTGTTGAACAGAGGGATTTGGAAGTTGTTTTCATGGTCAAAAAGCCTTAATGTACTAAAGCTgcaacatttaatacaattttgataTGGGAAAAGTCAGATGGTTAATCCTTTAATGTAACTGTGCCTGCAGTCTCTGCACATAATATTGTAGCTAATGCCACTGAGTAATAAGGATGAATCATTGTTCTTCACTGAAATAAAGTGCACTTTTCCCTTGTTATATCTCTCAGTTTCTACATAGTATTTTATCATTTACATAAAGGGTaaagtatacatacatacctacatacatacatacatacatacataaagatgCTATAAGTgaatgcagatttatttatttttctagtaCCTAAGCAAATATGATACTATTCTGCAAGCTACTTACTTTGGAAACTAGATTAATAACgctttttgtattcattacaaaatgttctctatcaataaatgttattgttatttatatgaataaa

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005576 extracellular region cellular_component
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K11167 DHRS7C; dehydrogenase/reductase SDR family member 7C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52549 lncRNA upstream 133532 20627094 ~ 20627334 (+) True G42177
TU52537 lncRNA upstream 209049 20551260 ~ 20551817 (+) True G42172
TU52478 lncRNA upstream 368257 20387684 ~ 20392609 (+) True G42127
TU52418 lncRNA upstream 773006 19986178 ~ 19987860 (+) True G42077
TU52389 lncRNA upstream 1174073 19586528 ~ 19586793 (+) True G42054
TU52658 lncRNA downstream 70996 20839589 ~ 20840560 (+) True G42269
TU52670 lncRNA downstream 121082 20889675 ~ 20890332 (+) True G42277
TU52751 lncRNA downstream 487992 21256585 ~ 21259588 (+) True G42330
TU52752 lncRNA downstream 487992 21256585 ~ 21304213 (+) False G42330
TU52762 lncRNA downstream 532015 21300608 ~ 21471560 (+) False AMCG00013118
AMCG00013091 mRNA upstream 110603 20641692 ~ 20650263 (+) True AMCG00013091
AMCG00013093 mRNA upstream 135568 20567147 ~ 20625298 (+) True AMCG00013093
AMCG00013092 mRNA upstream 195522 20558228 ~ 20565344 (+) True AMCG00013092
AMCG00013089 mRNA upstream 226543 20523791 ~ 20534323 (+) True AMCG00013089
AMCG00013086 mRNA upstream 247340 20512716 ~ 20513526 (+) True AMCG00013086
AMCG00013098 mRNA downstream 4635 20773228 ~ 20775301 (+) True AMCG00013098
AMCG00013101 mRNA downstream 48928 20817521 ~ 20830999 (+) True AMCG00013101
AMCG00013100 mRNA downstream 191828 20960421 ~ 20980242 (+) True AMCG00013100
AMCG00013104 mRNA downstream 220260 20988853 ~ 20999310 (+) True AMCG00013104
AMCG00013105 mRNA downstream 260972 21029565 ~ 21075759 (+) True AMCG00013105
TU52302 other upstream 1731588 19025561 ~ 19029278 (+) True G41978
TU51470 other upstream 5130239 15620785 ~ 15630627 (+) False AMCG00012982
TU51437 other upstream 5281500 15477179 ~ 15479366 (+) True G41264
TU51320 other upstream 5624137 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 6127453 14632357 ~ 14633413 (+) True G41059
TU52747 other downstream 501082 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 602250 21370843 ~ 21418787 (+) True AMCG00013126
TU52772 other downstream 658067 21426660 ~ 21486808 (+) True G42344
TU52771 other downstream 716314 21484907 ~ 21486808 (+) False G42344
TU52773 other downstream 716728 21485321 ~ 21486808 (+) False G42344

Expression Profile