RNA id: AMCG00013102


Basic Information

Item Value
RNA id AMCG00013102
length 609
RNA type mRNA
GC content 0.45
exon number 3
gene id AMCG00013102
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 20984036 ~ 20985885 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGAACAGCAAAAGTGGAGCACTCTCAAAGGAAATTCTGGAAGATTTGAAGCTGAGCACCAGATACACTGAGGAGGAGCTGAGTGCCTGGTACCAGTCCTTCCTGAAGGAATGTCCCAGTGGGAGGATCAGCAAGGAGCAATTTGAAGGTATTTATGCCAGCTTCTTCCCTGATGCGGATCCCAAGGAATATGCCCACCACGTCTTCAGAAGCTTTGATGCCAACAGTGATGGCACCTTAGACTTTAAGGAATATATCATTGCACTGCACCTGACCTCATCCGGGAAAACTATGCAGAAACTGGAGTGGGCATTTGCTCTGTATGACGTTGATGCCAATGGGACCATCAGTAAAACCGAAGTCCTGGAAATTGTCAAGgccatatttaaaatgataagcGAAGATGACCAAAAGACGCTTCCACAGGACGAGAGTACGCCAGAAAAGAGAACGGACAAAATCTGGGATTACTTCGGCAAGAAAGAACAAGATAAGCTTACAGAAGGGGAGTTTATTCAAGGGATCATGGAGAACAAGGAAATCCTCAGATTGATACAGTTCGAGCCACAAAAGGTCAAAGATAGGCTAAAGGAAAAGAATCAGTAG

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K13764 RCVRN; recoverin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52672 lncRNA downstream 93748 20889683 ~ 20890288 (-) True G42278
TU52673 lncRNA downstream 93748 20889683 ~ 20890288 (-) False G42278
TU52621 lncRNA downstream 309808 20666345 ~ 20674228 (-) True G42242
TU52493 lncRNA downstream 578951 20401708 ~ 20405085 (-) True G42136
TU52419 lncRNA downstream 996301 19986243 ~ 19987735 (-) True G42078
TU52824 lncRNA upstream 208264 21194149 ~ 21195350 (-) True G42376
TU52826 lncRNA upstream 223380 21209265 ~ 21209649 (-) True G42378
TU52820 lncRNA upstream 301435 21287320 ~ 21310348 (-) True G42372
TU52830 lncRNA upstream 355085 21340970 ~ 21427716 (-) True G42382
TU52831 lncRNA upstream 360590 21346475 ~ 21346834 (-) True G42383
AMCG00013103 mRNA downstream 129972 20841618 ~ 20854064 (-) True AMCG00013103
AMCG00013097 mRNA downstream 224034 20747489 ~ 20760002 (-) True AMCG00013097
AMCG00013096 mRNA downstream 249767 20685271 ~ 20734269 (-) True AMCG00013096
AMCG00013094 mRNA downstream 303428 20646613 ~ 20680608 (-) True AMCG00013094
AMCG00013095 mRNA downstream 405559 20550867 ~ 20578477 (-) True AMCG00013095
AMCG00013106 mRNA upstream 93721 21079606 ~ 21096419 (-) True AMCG00013106
AMCG00013114 mRNA upstream 262197 21248082 ~ 21263482 (-) True AMCG00013114
AMCG00013117 mRNA upstream 284464 21270349 ~ 21278662 (-) True AMCG00013117
AMCG00013111 mRNA upstream 301261 21287146 ~ 21289069 (-) True AMCG00013111
AMCG00013112 mRNA upstream 314208 21300093 ~ 21311306 (-) True AMCG00013112
TU52536 other downstream 438225 20531194 ~ 20545811 (-) True AMCG00013090
TU52412 other downstream 1001156 19980336 ~ 19982880 (-) True G42076
TU52331 other downstream 1912618 19068245 ~ 19071418 (-) True AMCG00013070
TU52316 other downstream 1961258 18977060 ~ 19022778 (-) False AMCG00013071
TU52315 other downstream 1985270 18977060 ~ 18998766 (-) True AMCG00013071
TU52810 other upstream 266222 21252107 ~ 21301421 (-) True G42366
TU52828 other upstream 320301 21306186 ~ 21307693 (-) False AMCG00013112
TU52819 other upstream 350332 21336217 ~ 21517177 (-) True G42371
TU52829 other upstream 351182 21337067 ~ 21375763 (-) True G42381
TU52823 other upstream 364775 21350660 ~ 21360107 (-) True G42375

Expression Profile