RNA id: AMCG00013103


Basic Information

Item Value
RNA id AMCG00013103
length 2381
RNA type mRNA
GC content 0.42
exon number 5
gene id AMCG00013103
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 20841618 ~ 20854064 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAATAGACCGGCGTCAGAGAGCTTCTCTGGCTCTCACCTTAAACTTTATCGCCCTCATCTTCGCCATCTCTGCCCTGAGCACGAGCTACTGGTGCGAGGGGACCAGGAAAGTGGTCAAGCCCTTTTGCAAAGGACCTGTGACTCTCAAGCAGAGGTACTGTATCAGGTTCAACAGCTCCAACATCAACGACAGCCGGCTCGTCCAGTACATCTGGGAAACTGGGGACGACAAGTTCTTAATGAGACACTTCCACACCGGCATCTGGTTCTCCTGCGAGGAAAACATCAACGGGATAGgagAGAGCTGTAGAAGTTTTCTTAACATCGCACCTTCGCACGAGAGAGGTGTCCTCTGGCTGTGTATTGTGGCTGAGTGTCTCTATATCATCCTGCTGGTGACGGGTGGGATCCTCATGTCCATAGAGATCTGTCACTACGCTAATGTCATCGACGGGCTCAAACTCAACGCCTTCGCTGCGATATTTACCGTCTTATCAGGCCTTTTAGGTATGGTTGCACACATGATGTTCACCACAGCTTTCCAGTTAACTGTGAGTCTTGGGCCAGAAGACTGGAGACCCCAGACCTGGGACTATGGCTGGTCATATTGCCTTGCTTGGAGTTCCTTCACCAGTTGCATGGCGTCCTCCGTGACAACAATCAACAGGTACACAAAGACAATCCTGGAGTTCAAGCATAAAAGGAGGAACATTGAGAAAAACCTCAAAGTCAAACAAAAGCTGCTAGACTTCGACTCGCCCGACCAAGTGTGGGATATGTACATCAGCTCTGTCCCCAGCACGGCTGAGGAACTGCTGGATCTGTCCAGCAACGGGCGGAAGCTCTCCAACACGTCCGTCTTCCTGGATCTCAATGACTTGCCAGACCCGCAGGTTGAGGAATATTGCTGAACACTCCTGGTTCATTTCTGGTTGTTCTCACTCAGATATTCTGATTCCATTTTGTCCACCTCTTCCGacaaaactataaacaaaaGTATTGCCAATATTCTTATCATGAAGctactgagaaaaacaaaagtattacaattaggtagggttatttatttattgttatacaCACATTGTGCGTGGAGGCAAATTGCTGTTGTCTTCCTATGCTTGCGGTGTTTTCTGTGCATACtagtgtgtgtgggagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgttccgTATTTGCCTTTTctgacaaaagcaaaaaatttaaaattaaaggaaatgaaaaaaaagaaaagccaaaaGTCAGCACAAGAGATTTAAGTATATAAAAGTGAACTTCCAAAAATAGAGGCCTACtgaatggagaaaaataaaatgttttagaaatagTAGAATgtttcttaaaagaaagaaaaaacggaATGCATAGTAAGTTTCAAACATTATTCCACTTGGATTTTCTATGCTCAGTATTGAGCTCTTGTATCAGaatgcttttccatttttacatTCTGAGGTCCTATTTTCTAGAACGTATTTCTGTAGGTTTGTGTGCAgtggaaacaaaatgttcagTGCCTTTGCCAGGAAACTATTAATTTGTGCTTCTGTTCAAACTTAACATGCATGCCGAATACTGTAAATTTTTAAAGCTAACTAtttagttgttgtttattttgtatgaaatgAAGAATCTTTCTTACTGAACGTTAATGTGGTGACATGGCAGATTGGAAACCTAGCATTTGTATTTGCTGGTGATGGCAATTACAAGATAATCTCTGTGTCATTAAAGACCAAGAAAAAGCTAAAATGACTGGTGACTTGGAGCATTTTTTTGgatcacaaaaagaaaatctgtgaTAGCTGTATTGTCCTGTTCAAAGAATCAGCATTTGAAATTGTCACATTAGAGAAGCTATCGCTGAATTAGTATATCCATGGCAGAAGGTGAAAAAGCTGTCAGCCTTCTGTAGATTGAGATGGCAAGCAGTCCAACTAATACTCGGCcaatacaaacatttgtttcCCATTGAAGTAGCACACGTAATCTGTAATCTCACAACCAGCAAGGGACATATCAACAGGCTTATGTAAAGCATACCTCCATTCACAGCCAGCTGGTGAAAATGGCAGGTATATTTGGATAGATCTGAgtgcaaaactaaaataaggGCAAATTAATTGAAGTTTGGTTCTCAACAGAGTAACTCCCTACACAAAACCACTTTTTGCCCAGTACCCCCAAACCAGAGACATATTTAGCTGAACACCAGTGTCAGATTGATACTCAGTTTGCCTTCTGTTTGCCATCAGCCTCGGAATACAAGCAAAGCATACTACTTacctttataaaaatgtaatttactacACCATgagaaaaacacagtaaagtatAGAAAAgctacagtg

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52621 lncRNA downstream 167390 20666345 ~ 20674228 (-) True G42242
TU52493 lncRNA downstream 436533 20401708 ~ 20405085 (-) True G42136
TU52419 lncRNA downstream 853883 19986243 ~ 19987735 (-) True G42078
TU52393 lncRNA downstream 1064889 19776524 ~ 19776729 (-) True G42058
TU52391 lncRNA downstream 1156960 19684436 ~ 19684658 (-) True G42056
TU52672 lncRNA upstream 35619 20889683 ~ 20890288 (-) True G42278
TU52673 lncRNA upstream 35619 20889683 ~ 20890288 (-) False G42278
TU52824 lncRNA upstream 340085 21194149 ~ 21195350 (-) True G42376
TU52826 lncRNA upstream 355201 21209265 ~ 21209649 (-) True G42378
TU52820 lncRNA upstream 433256 21287320 ~ 21310348 (-) True G42372
AMCG00013097 mRNA downstream 81616 20747489 ~ 20760002 (-) True AMCG00013097
AMCG00013096 mRNA downstream 107349 20685271 ~ 20734269 (-) True AMCG00013096
AMCG00013094 mRNA downstream 161010 20646613 ~ 20680608 (-) True AMCG00013094
AMCG00013095 mRNA downstream 263141 20550867 ~ 20578477 (-) True AMCG00013095
AMCG00013090 mRNA downstream 302813 20533583 ~ 20538805 (-) False AMCG00013090
AMCG00013102 mRNA upstream 129972 20984036 ~ 20985885 (-) True AMCG00013102
AMCG00013106 mRNA upstream 225542 21079606 ~ 21096419 (-) True AMCG00013106
AMCG00013114 mRNA upstream 394018 21248082 ~ 21263482 (-) True AMCG00013114
AMCG00013117 mRNA upstream 416285 21270349 ~ 21278662 (-) True AMCG00013117
AMCG00013111 mRNA upstream 433082 21287146 ~ 21289069 (-) True AMCG00013111
TU52536 other downstream 295807 20531194 ~ 20545811 (-) True AMCG00013090
TU52412 other downstream 858738 19980336 ~ 19982880 (-) True G42076
TU52331 other downstream 1770200 19068245 ~ 19071418 (-) True AMCG00013070
TU52316 other downstream 1818840 18977060 ~ 19022778 (-) False AMCG00013071
TU52315 other downstream 1842852 18977060 ~ 18998766 (-) True AMCG00013071
TU52810 other upstream 398043 21252107 ~ 21301421 (-) True G42366
TU52828 other upstream 452122 21306186 ~ 21307693 (-) False AMCG00013112
TU52819 other upstream 482153 21336217 ~ 21517177 (-) True G42371
TU52829 other upstream 483003 21337067 ~ 21375763 (-) True G42381
TU52823 other upstream 496596 21350660 ~ 21360107 (-) True G42375

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00008889 True 1291 mRNA 0.54 5 NC_007123.7 390051 ~ 406495 (+)