RNA id: AMCG00013110


Basic Information

Item Value
RNA id AMCG00013110
length 1080
RNA type mRNA
GC content 0.47
exon number 10
gene id AMCG00013110
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21336157 ~ 21338083 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTACAGATGCGGAGATGGCCGTTTTTGGCCCGGCTGCCATATACCTGAGGAagcctgagagggagagaattgAGGCTCAGAACAAACCCTTTGATGCTaaaactgctgtgtttgtgtctgagcCCAAGGAGTTGTACCTTAAAGGTACTCTCCAGAGCAAAGAAGGGGGCAAAGCCACTGTAAAAACAGAGGGAGGCCAAACTCTAACAGTTAAGGAAGATGAAGTCTTCCCCATGAATCCTCCTAAGTTTGATAAAATTGAGGACATGGCGATGATGACCCACCTCAATGAAGCCTCTGTGCTGTATAACCTCAAAGAGCGTTACGCAGCATGGATGATCTACACCTACTCTGGGCTGTTTTGTGTAACTGTGAACCCCTACAAGTGGCTCCCAGTGTACAACCCAGAAGTTGTGACAGCGTACAGAGGCAAAAAGCGCATGGAGGCTCCACCACACATCTTCTCTGTCTCTGATAATGCCTATCAGAACATGCTCACTGATCGTGAGAACCAGTCCGTCCTGATTACTGGAGAATCTGGTGCTGGAAAGACTGTGAACACGAAACGTGTCATCCAGTACTTTGCGACAATCGCAGTGTCTGGGGAAAAGAAAGCTCCAGATCCTGGCAAAATGCAGGGAACCCTGGAGGATCAAATCATCTCAGCCAACCCTCTGCTGGAGGCTTTTGGTAATGCCAAGACAGTGAGGAATGACAACTCCTCTCGCTTTgGTAAATTCATCAGAATCCATTTTGGAACTACAGGAAAACTAGCTTCTGCTGATATTGAGACTTATTTGCTGGAGAAGTCCAGAGTAACATTCCAGCTGTCTGATGAAAGGAGCTACCACATCTTTTATCAGATCATGACCAACCACAAGCCTGAGCTTATTGACATGCTTCTGATCACCACCAATCCCTATGACTTCCCTATGATCAGCCAGGGTCAGATCTCTGTGGCCAGCATTGATGACAAAGAGGAGCTGGTTGCCACAGATacTGCCATTGATATTCTGGGGTTTACAAGTGAGGAGAAAACAGGCATTTACAAGCTGACTGGTGCTGTGATGCACCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52820 lncRNA downstream 25809 21287320 ~ 21310348 (-) True G42372
TU52826 lncRNA downstream 126508 21209265 ~ 21209649 (-) True G42378
TU52824 lncRNA downstream 140807 21194149 ~ 21195350 (-) True G42376
TU52672 lncRNA downstream 445869 20889683 ~ 20890288 (-) True G42278
TU52830 lncRNA upstream 2887 21340970 ~ 21427716 (-) True G42382
TU52831 lncRNA upstream 8392 21346475 ~ 21346834 (-) True G42383
TU52834 lncRNA upstream 61561 21399644 ~ 21400158 (-) True G42386
TU52822 lncRNA upstream 110809 21448892 ~ 21449281 (-) False AMCG00013131
TU52907 lncRNA upstream 555541 21893624 ~ 21905597 (-) True G42440
AMCG00013113 mRNA downstream 1026 21328200 ~ 21335131 (-) True AMCG00013113
AMCG00013112 mRNA downstream 24851 21300093 ~ 21311306 (-) True AMCG00013112
AMCG00013111 mRNA downstream 47088 21287146 ~ 21289069 (-) True AMCG00013111
AMCG00013117 mRNA downstream 57495 21270349 ~ 21278662 (-) True AMCG00013117
AMCG00013114 mRNA downstream 72675 21248082 ~ 21263482 (-) True AMCG00013114
AMCG00013116 mRNA upstream 12376 21350459 ~ 21350814 (-) True AMCG00013116
AMCG00013115 mRNA upstream 13180 21351263 ~ 21375164 (-) True AMCG00013115
AMCG00013138 mRNA upstream 56193 21394276 ~ 21398255 (-) True AMCG00013138
AMCG00013137 mRNA upstream 74283 21412366 ~ 21422118 (-) True AMCG00013137
AMCG00013131 mRNA upstream 110246 21448329 ~ 21449954 (-) True AMCG00013131
TU52828 other downstream 28464 21306186 ~ 21307693 (-) False AMCG00013112
TU52810 other downstream 34736 21252107 ~ 21301421 (-) True G42366
TU52536 other downstream 790346 20531194 ~ 20545811 (-) True AMCG00013090
TU52412 other downstream 1353277 19980336 ~ 19982880 (-) True G42076
TU52331 other downstream 2264739 19068245 ~ 19071418 (-) True AMCG00013070
TU52823 other upstream 12577 21350660 ~ 21360107 (-) True G42375
TU52821 other upstream 73856 21411939 ~ 21414964 (-) False AMCG00013137
TU52837 other upstream 174001 21512084 ~ 21514693 (-) False AMCG00013133
TU53293 other upstream 2506000 23844083 ~ 23847477 (-) True G42749
TU53481 other upstream 3544036 24882119 ~ 24902428 (-) True AMCG00013204

Expression Profile