RNA id: AMCG00013111


Basic Information

Item Value
RNA id AMCG00013111
length 1080
RNA type mRNA
GC content 0.47
exon number 10
gene id AMCG00013111
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21287146 ~ 21289069 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTGCGGACGGGGAGATGGCCGTTTTTGGCCCGGCTGCCATATACCTGAGGAagcctgagagggagagaattgAGGCTCAGAACAAACCCTTTGATGCTaaaactgctgtgtttgtgtctgagcCCAAGGAGTTGTACCTTAAAGGTACTCTCCAGAGCAAAGAAGGGGGCAAAGCCACTGTAAAAACAGAGGGAGGCCAAACTCTAACAGTTAAGGAAGATGAAGTCTTCCCCATGAATCCTCCCAAGTTTGATAAAATTGAGGACATGGCGATGCTGACCCACCTCAATGAAGCCTCTGTGCTGTATAACCTCAAAGAGCGTTACGCAGCATGGATGATCTACACCTACTCTGGACTGTTTTGTGTAACTGTGAACCCCTACAAGTGGCTCCCAGTGTACAACCCAGAAGTTGTGACAGCATACAGAGGCAAAAAGCGCATGGAGGCTCCACCACACATCTTCTCAGTTTCTGATAATGCCTATCAGAACATGCTCACTGaTCGTGAAAACCAATCAATCCTGATTACTGGAGAATCTGGTGCTGGAAAGACTGTGAACACGAAACGTGTCATCCAGTACTTTGCGACAATCGCAGTGTCTGGGGAAAAGAAAGCTCCAGAACCTGGCAAAATGCAGGGAACCCTGGAGGATCAAATCATCTCAGCCAACCCTCTGCTGGAGGCTTTTGGTAATGCCAAGACAGTGAGGAATGACAACTCCTCTCGCTTTgGTAAATTCATCAGAATCCATTTTGGAACTACAGGAAAACTAGCTTCTGCTGATATTGAGACTTaTTTGCTGGAGAAGTCCAGAGTAACATTCCAGCTGTCTGATGAAAGGAGCTACCACATCTTTTATCAGATCATGACCAACCACAAGCCTGAGCTTATAGACATGCTTCTGATCACCACCAATCCCTATGACTTCCCTATGATCAGCCAGGGTCAGATCTCTGTGGCCAGCATTGATGACAAAGAGGAGCTGGTTGCCACAGATacTGCCATTGATATTCTGGGCTTTACAAGTGAGGAGAAAACAGGCATCTACAAGCTGACTGGTGCTGTGATGCACCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52826 lncRNA downstream 77497 21209265 ~ 21209649 (-) True G42378
TU52824 lncRNA downstream 91796 21194149 ~ 21195350 (-) True G42376
TU52672 lncRNA downstream 396858 20889683 ~ 20890288 (-) True G42278
TU52673 lncRNA downstream 396858 20889683 ~ 20890288 (-) False G42278
TU52621 lncRNA downstream 612918 20666345 ~ 20674228 (-) True G42242
TU52830 lncRNA upstream 51901 21340970 ~ 21427716 (-) True G42382
TU52831 lncRNA upstream 57406 21346475 ~ 21346834 (-) True G42383
TU52834 lncRNA upstream 110575 21399644 ~ 21400158 (-) True G42386
TU52822 lncRNA upstream 159823 21448892 ~ 21449281 (-) False AMCG00013131
TU52907 lncRNA upstream 604555 21893624 ~ 21905597 (-) True G42440
AMCG00013117 mRNA downstream 8484 21270349 ~ 21278662 (-) True AMCG00013117
AMCG00013114 mRNA downstream 23664 21248082 ~ 21263482 (-) True AMCG00013114
AMCG00013106 mRNA downstream 190727 21079606 ~ 21096419 (-) True AMCG00013106
AMCG00013102 mRNA downstream 301261 20984036 ~ 20985885 (-) True AMCG00013102
AMCG00013103 mRNA downstream 433082 20841618 ~ 20854064 (-) True AMCG00013103
AMCG00013112 mRNA upstream 11024 21300093 ~ 21311306 (-) True AMCG00013112
AMCG00013113 mRNA upstream 39131 21328200 ~ 21335131 (-) True AMCG00013113
AMCG00013110 mRNA upstream 47088 21336157 ~ 21338083 (-) True AMCG00013110
AMCG00013116 mRNA upstream 61390 21350459 ~ 21350814 (-) True AMCG00013116
AMCG00013115 mRNA upstream 62194 21351263 ~ 21375164 (-) True AMCG00013115
TU52536 other downstream 741335 20531194 ~ 20545811 (-) True AMCG00013090
TU52412 other downstream 1304266 19980336 ~ 19982880 (-) True G42076
TU52331 other downstream 2215728 19068245 ~ 19071418 (-) True AMCG00013070
TU52316 other downstream 2264368 18977060 ~ 19022778 (-) False AMCG00013071
TU52315 other downstream 2288380 18977060 ~ 18998766 (-) True AMCG00013071
TU52828 other upstream 17117 21306186 ~ 21307693 (-) False AMCG00013112
TU52819 other upstream 47148 21336217 ~ 21517177 (-) True G42371
TU52829 other upstream 47998 21337067 ~ 21375763 (-) True G42381
TU52823 other upstream 61591 21350660 ~ 21360107 (-) True G42375
TU52821 other upstream 122870 21411939 ~ 21414964 (-) False AMCG00013137

Expression Profile