RNA id: AMCG00013112


Basic Information

Item Value
RNA id AMCG00013112
length 3634
RNA type mRNA
GC content 0.47
exon number 25
gene id AMCG00013112
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21300093 ~ 21311306 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATAGTATATTCCACAGGACAAGAGGAACTGATACAGTTCCAATGTGGTCACCTTCTTGTATGCTTACATCCACAGTAAACTGTCACCATGAGTGCGGACGGGGAGATGGCCGTTTTTGGCGAGGCTGCCATATATCTGAGGAagcctgagagggagagaattgAGGCTCAGAACAAACCCTTTGATGCTAAAACTGCTGTGTTTGTATCTGAGCCCAAGGAGTTGTACCTTAAAGGTATTCTCCAAAGCAAAGAAGGGGGAAAAGCCACTGTAAAAACAGAGGGAGGCCAAACTCTAACAGTTAAAGAAGATGAAATCTTCCCCATGAATCCTCCCAAGTTTGATAAAATTGAGGACATGGCGATGATGACCCACCTCAATGAAGCCTCTGTGCTGTATAACCTCAAAGAGCGTTACGCAGCATGGATGATCTACACCTACTCTGGGCTGTTTTGTGTAACTGTGAACCCCTACAAGTGGCTCCCAGTGTACAACCCAGAAGTTGTAACAGCATACAGAGGCAAAAAGCGCATGGAGGCTCCACCACACATCTTCTCTGTCTCCGATAGTGCCTATCAGAATATGCTTACGGCCAACCCTCTGCTGGAGGCTTTCGGTAATGCCAAGACAGTGAGGAATGACAACTCCTCTCGCTTTGGTAAATTCATCAGAATTCACTTTGGAACCACAGGAAAACTGGCTTCTGCTGACATTGAGACTTACTTGCTGGAGAAGTCCAGAGTAACATTCCAGCTGTCTGAAGAAAGGAGCTACCACATCTTTTATCAGATCATGACCAACCACAAGCCAGAGCTCATtgAAATGCTCCTGATCACCACCAATCCCTATGACTTCCCTATGGTCAGTCAGGGGCAAATTTCTGTGGCCAGCATTGATGACAAGGAGGAGCTGGTTGCTACAGATAGTGCTATTGATATTTTGGGATTCACTTCTGAAGAGAAAACGGGAATCTACAAACTGACCGGTGCTGTGATGCACTATGGTAACATGAAATTCAAGCAGAAGCAACGTGAGGAGCAGGCTGAACCTGACGGCACTGAGGTTGGTGCTCTGGCAAAATCTGTTTATGAGAAAATGTTCTTGTGGATGGTCGTTCGCATCAACCAGATGTTGGACACCAAGCAGCCCAGACAGTTCTTCATTGGGGTACTGGATATTGCGGGATTCGAGATTTTTGATGAGAACTTGGGCAAGCTGATGACCAACTTGAGGAGCACCCATCCTCACTTTGTACGCTGCTTGATTCCCAATGAATCAAAGACACCAGGTCTTATGGAAAACTTCCTGGTTATCCATCAGCTGAGGTGCAACGGTGTGCTGGAAGGTATCAGAATCTGCAGAAAAGGATTTCCAAGCAGAATTCTGTACGGTGACTTCAAACAAAGGTATAAAGTCCTGAATGCCAGTGCCATCCCAGATGGTCAGTTCATCGACAGCAAGAAAGCATCAGAGAAGCTCTTGGGATCCATTGATGTAGATCACACTCAGTACAAGTTTGGACACACCAAGGTGTTCTTTAAGGCTGGTTTGCTGGGAACCCTTGAGGAGATGCGAGATGAGAAATTAGCTGCACTCATCACTTGTACTCAGGCTCTTTGCCGTGGTTTCCTGATGAGAAAGGAATTTGTTAAGATGATGGAAAGGAGagagtccgTTTTCACCATCCAATACAACATCCGCTCATTCATGAATGTGAAACACTGGCCATGGATGAAGCTGTACTTCAAGATCAAGCCACTTCTGAGGAGCGCAGAGGCAGAGAAGGAATTTGCCAACATGAAGGAAGAATTTGCCAAGTGCAAGGAAGATCTGGCAAAGGCAGAAGCTAAGAGAAAGGACCTAGAAGAGAAAATGGTGTCTCTTCTACAGGAAAAGAATGACCTGTTGTTGCAAGTCCAGTCTgaAGCTGAGGGTCTCAGTGATGCTGAGGAAAGATGTGAGGGcctgatcaaaaacaaaatccagctCGAGGCCAAActtGAGGGTTCACTGGAGCAAGAGAAGAAACTCCGAATGGACCTTGAGAGGGCCAAGAGAAAGCTGGAGGGTGATCTGAAACTAGCCCAGGAATCCGTAATGGATctggaaaatgacaaacaacagTCAGAAGAAAAAATCAAGAAGAAAGACTTTGAAATAAGTCAGTTTCTTAGCAAAATTGAGGATGAGCAAGCTCTGTGTGCTCAGCTGCAGAAGAAGATTAAGGAGCTCCAGGCTCGAATTGAGGAACTGGAAGAAGAAATTGAGGCTGAACGTGCTGCTCGTGCAAAGACTGAGAAGCAGAGGGCTGATCTCTCCAGGGAACTTGAGGAGATCAGTGAAAGGCTTGAAGAGGCTGGTGGTGCCACTTCAGCTCAGATTGAGATGAACAAGAAACGTGAAGCTGAGTTCCAGAAGCTCCGCCGTGACCTTGAAGAGTCGACTCTGCAGCACGAGGCCACCGCTGCTGCCCTCCGCAAGAAGCAGGCCGACAGCGTGGCAGAATTAGGAGAACAGATTGACAACCTTCAACGCGTCAAGCagaagctggagaaggagaagagtgaatacaaaatggaaatcGATGACCTCTCCAGCAACATGGAGTCTGTAGCCAAGTCTAAGGCTAATCTGGAGAAGATATGTCGTACTCTAGAAGACCAGCTTAGTGAACTGAGGAGTAAGAGTGATGAAAACATCCGCCAGATGAATGACTTCAGTGCACAAAAAGCAAGATTGCAAACAGAGAATGGTGAATTTTCTCGTCAGCTGGAAGAGAAAGAAGCTCTCGTATCCCAGCTGACAAGAGGAAAACAGGCTTATACTCAGCAAATTGAGGAGCTTAAGAGGCAAATGGAAGAGGAAGTAAAGGCCAAGAATGCCCTGGCTCATGGTTTACAATCAGCCCGCCATGACTGTGACCTGCTCCGGGAGCAATatgaggaggagcaggaggccaAGGCTGAGCTTCAGCGTGGAATGTCCAAGGCCAACAGTGAAGTGGCTCAGTGGAGAACAAAATACGAAACTGACGCCATCCAGCGCACTGAGGAGCTTGAGGAGTCCAAGAAAAAACTTGCCCAGCGCCTGCAAGATGCTGAGGAACAAATTGAGGCTGTGAACTCCAAGTGTGCCTCATTGGAAAAGACCAAGCAGAGGCTGCAGGGTGAGGTGGAAGATCTCATGATTGATGTGGAGAGAGCAAACGCTCAAGCAGCTGCCCTTGATAAGAAACAGAGGAACTTTGACAAGgTCCTTGCAGAATGGAAGCAGAAGTTTGAGGAGGGCCAGGCAGAGCTGGAGGCGGCTCAGAAAGAGGCTCGCTCTCTCAGCACTGAGCTTTTCAAGATGAAGAACTCCTATGAAGAGGCTCTGGATCATCTTGAAACTCTTAAACGAGAAAACAAGAACTTGCAGCAGGAGATCTCAGACCTCACTGAACAGATTGGTGAGACTGGAAAGACCATCCACGAGCTGGAGAAGGCAAAGAAACAAGCAGAGACAGAAAAGTCTGAAATCCAGACTGCCCTGGAGGAGGCTGAGGCTTCACTGGAGCATGAGGAGTCCAAGATTCTTCGTATCCAGCTGGAACTGAACCAGATCAAATCAGAAGTGGACAGAAAGATTGCTGAG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0003774 motor activity molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52826 lncRNA downstream 90444 21209265 ~ 21209649 (-) True G42378
TU52824 lncRNA downstream 104743 21194149 ~ 21195350 (-) True G42376
TU52672 lncRNA downstream 409805 20889683 ~ 20890288 (-) True G42278
TU52673 lncRNA downstream 409805 20889683 ~ 20890288 (-) False G42278
TU52621 lncRNA downstream 625865 20666345 ~ 20674228 (-) True G42242
TU52830 lncRNA upstream 29664 21340970 ~ 21427716 (-) True G42382
TU52831 lncRNA upstream 35169 21346475 ~ 21346834 (-) True G42383
TU52834 lncRNA upstream 88338 21399644 ~ 21400158 (-) True G42386
TU52822 lncRNA upstream 137586 21448892 ~ 21449281 (-) False AMCG00013131
TU52907 lncRNA upstream 582318 21893624 ~ 21905597 (-) True G42440
AMCG00013111 mRNA downstream 11024 21287146 ~ 21289069 (-) True AMCG00013111
AMCG00013117 mRNA downstream 21431 21270349 ~ 21278662 (-) True AMCG00013117
AMCG00013114 mRNA downstream 36611 21248082 ~ 21263482 (-) True AMCG00013114
AMCG00013106 mRNA downstream 203674 21079606 ~ 21096419 (-) True AMCG00013106
AMCG00013102 mRNA downstream 314208 20984036 ~ 20985885 (-) True AMCG00013102
AMCG00013113 mRNA upstream 16894 21328200 ~ 21335131 (-) True AMCG00013113
AMCG00013110 mRNA upstream 24851 21336157 ~ 21338083 (-) True AMCG00013110
AMCG00013116 mRNA upstream 39153 21350459 ~ 21350814 (-) True AMCG00013116
AMCG00013115 mRNA upstream 39957 21351263 ~ 21375164 (-) True AMCG00013115
AMCG00013138 mRNA upstream 82970 21394276 ~ 21398255 (-) True AMCG00013138
TU52536 other downstream 754282 20531194 ~ 20545811 (-) True AMCG00013090
TU52412 other downstream 1317213 19980336 ~ 19982880 (-) True G42076
TU52331 other downstream 2228675 19068245 ~ 19071418 (-) True AMCG00013070
TU52316 other downstream 2277315 18977060 ~ 19022778 (-) False AMCG00013071
TU52315 other downstream 2301327 18977060 ~ 18998766 (-) True AMCG00013071
TU52819 other upstream 24911 21336217 ~ 21517177 (-) True G42371
TU52829 other upstream 25761 21337067 ~ 21375763 (-) True G42381
TU52823 other upstream 39354 21350660 ~ 21360107 (-) True G42375
TU52821 other upstream 100633 21411939 ~ 21414964 (-) False AMCG00013137
TU52837 other upstream 200778 21512084 ~ 21514693 (-) False AMCG00013133

Expression Profile