RNA id: AMCG00013114


Basic Information

Item Value
RNA id AMCG00013114
length 4395
RNA type mRNA
GC content 0.48
exon number 31
gene id AMCG00013114
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21248082 ~ 21263482 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTGCGGACGGGGAGATGGCCGTTTTTGGCCCGGCTGCCACATACCTGAGGAagcctgagagggagagaattgAGGCTCAGAACAAACCATTTGATGCTaaaactgctgtgtttgtgtctgagcCCAAGGAGTTGTACCTTAAAGGTACTCTCCAGAGCAAAGAAGGGGGCAAAGCCACTGTAAAAACAGAGGGAGGCCTAACTCTAACAGTTAAGGAAGATGAAATCTTCCCAATGAATCCTCCCAAGTATGATAAAATTGAGGACATGGCGATGATGACCCACCTCAGTGAAGCAACTGTGCTGTATAACCTCAAAGAGCGTTATGCAGCATGGATGATCTATACCTACTCTGGGCTGTTTTGTGTAACTGTGAACCCCTACAAGTGGCTCCCAGTGTACAATGCAGAAGTTGTGACAGCGTACAGAGGCAAAAAGCGCATGGAGGCTCCACCACACATCTTCTCAGTTTCTGATAGTGCTTATCAGAACATGCTCACTGATCGTGAAAACCAGTCAATCCTGATAACTGGAGAATCTGGTGCTGGAAAGACTGTGAACACGAAACGTGTCATCCAATACTTTGCGACAATCGCAGTGTCATCTGACAAGAAGAAAGATGTACAGCCTGGCAAGATAAAAGGAACCCTGGAGGATCAAATCATCTCAGCTAACCCTCTGCTGGAGGCTTTTGGTAACGCCAAGACAGTGAGGAATGACAACTCCTCTCGCTTTgGTAAATTCATCAGAATCCATTTTGGAACTACAGGAAAACTAGCTTCTGCTGATATTGAGACTTactTGTTAGAGAAGTCCAGAGTAACATTCCAGCTGTCTGACGAAAGGAGTTACCACATCTTTTATCAGATCATGACCAACCACAAGCCAGAGCTTATTGACATGCTTCTGATCACCACCAATCCCTATGATTACCCTATGATCAGCCAGGGTCAGATCACTGTGGCCAGCATTGATGACAAAGAGGAGCTGGATGCCACAGATgTAAACAATTCTGTTAATGCTCTGGCTAAGTCTATATATGAGAAAATGTTCTTGTGGATGGTCATTCGTATCAACCAGATGTTGGACACAAAACAATCAAGACAGTTCTTCATTGGTGTCCTGGACATTGCAGGATTTGAGATTTTTGATGTGAataGTGGAAAGAAGGGTGCCAAGAAGAAGGGTGGCTCATTTCAGACAGTGTCTGCTCTCTTCAggGAGAACTTGGGCAAGCTGATGACCAACTTGAGGAGCACACATCCTCACTTTGTGCGCTGCTTGATTCCTAATGAATCAAAGACACCAGAGGGTCAGTTCATTGACAGCAAGAAAGCTTCAGAGAAGCTCTTGGGATCCATTGATGTAGATCACACTCAGTATAAATTTGGGCACACAAAGGTTTTCTTTAAAGCTGGCCTGCTGGGTACACTTGAGGAGATGCGAGATGATAAACTTGCTAAACTTATTACTAGTACTCAGGCCCTTTGTCGGGGTTTCTTGATGAGAGTGGAGTTCCAACAAATGATGGAAAGAAGAGAGTCGGTTTTCACCATTCAATACAACATCCGCTCATTCATGAATGTGAAACACTGGCCATGGATGAAGCTGTACTTCAAGATCAAGCCACTTCTGAAGAGCGCAGAAACTGAGAAGGAATTTGCCAACATGAAGGAAGAATTTGTGAAGTGCAAGGAAGATCTGAAAAAGGCAGAAGCCAAGAGAAAGGAGCTTGAGGAGAAGATGGTGTCTCTGCTGCAGGAAAATAATGACCTGCTGTTGCAAGTCCAGAAGGACTTTGAAACAAGCCAACTCCTCAGTAAGATTGAGGATGAACAAACTCTGGGTGTTCAGCTGCAGAAGAAGATTAAGGAGCTCCAGGCTCGTATTGAAGAACTGGAGGAAGAAACGGAGGCTGAACGTGCTGCTCGTGCAAAGATTGAGAAGCAGAGGGCTGATCTCTCCAGGGAACTTGAGGAGATCAGTGAAAGGCTTGAAGAGGCTGGTGGTGCCACTTCTGCTCAGATTGAGATGAACAAGAAACGTGAAGCTGAATTCCTGAAGCTCCGCCGCGACCTTGAAGAGTCGACTCTGCAGCACGAGGCCACCGCTGCTGCCCTCCGCAAGAAGCAGGCCGACAGCGTGGCAGAATTAGGAGAACAGATTGACAACCTTCAGCGCGTCAAGCagaagctggagaaggagaagagtgaatacaaaatggaaatcGATGACCTCTCCAGCAACATGGAAGCCATAGCCAAATCCAAGgCTAATCTGGAGAAGATGTGCCGTACTCTGGAGGACCAACTCAGTGAACTCAAGTCTAAGAGTGATGAGAACACACGCCAGATTAATGACCTGAGTACACAAAAAGCAAGACTAAACACAGAAAATGgTGAATTTGCACGCCAACTGGATGAGAAAGAAGCTCTGGTATCCCAACTAACAAGAGGAAAGCAGGCCTACACTCAACAAATTGAAGAGCTGAAAAGGCATATGGAAGAGGAAACCAAGGCTAAGAATGCCCTGGCTCATGCTTTACAATCAGCTCGCCATGACTGTGACCTGCTCCGGGAGCAATatgaggaggagcaggaggccaAGGCTGAACTTCAGCGCGGAATGTCCAAGGCCAACAGTGAAGTGGCTCAGTGGAGAATAAAATACGAAACTGATGCCATCCAGCGCACTGAGGAGCTTGAGGAAGCCAAGAAAAAGCTTGCCCAGCGCTTGCAAGATGCTGAGGAACAAATTGAGGCTATGAACTCCAAGTGCGCCTCTCTGGAAAAGACCAAGCAGAGGCTGCAGGGTGAGGTGGAAGACCTCATGATTGATgtTCTGGCAGAATGGAAGCAGAAGTTTGAGGAGGGCCAGGCAGAGCTGGAGTCAAGTCTAAAAGAAGCTCGCTCTCTCAGCACTGAGCTTTTCAAGATGAAGAACTCCTATGAAGAGGCTCTGGATCATCTTGAGACCCTTAAGCGCGAGAACAAGAACTTACAGCAGGAGATCTCAGACCTCACTGAACAGATTGGTGAGAGTGGAAAAACAATTCACGAGCTGGAGAAGGCAAAGAAACAAGCTGAGACAGAGAAGTCTGAATTCCAAACTGCCCTAGAGGAGGCCGAGGCTACACTGGAGCATGAGGAAGCGAAGATCCTTCGTATTCAGCTGGAACTAAACCAAATCAAGTCAGAGATTGACAGAAAGATTGCTGAGAAAGATGAGGAGCTTGAGCAGAACAAGAGAAACAGCCAAAGGATTATTGACCAAATGCAAAGTAGTCTTGAGGCCGAGATCAGGAGCAGGAATGATGCCCTGAGAGTGAAGAAAAAGATGGAGGGAGATCTCAATGAGATGGAAATCCAGCTGAGCCACGCCAACCGCCAGGCTGCCGAGGCCCAGAAACAACTGAGGAACGTCCAAGGACAACTCAAGGATGCCCAACTGCACCTGGATGATGCTATCAGGGGACAGGAGGACATGAAGGAACAGGTTGCCATGGTGGAGCGAAGGAACACCCTCATGATGGCTGAGATTGAGGAAATGAGGGCTGCCCTggaacagacagagagagcacgCAAATTGGCGGAGCAAGAATTGCTTGATGCCAGTGAACGTGTGCAGCTGCTGCACTCCCAGAATACCAGCCTGATCAACACAAAGAAGAAGCTTGAGACTGACATTGCTCAGCTCCAAGGTGAAGTTGATGACACCATCCAGGAAGCAAGGAATGCAGAAGAAAAGGCCAAGAAGGCTATTACTGATGCTGCTATGATGGCTGAGGAGCTGAAGAAGGAGCAGGACACCAGCTCTCACCTGGAGAGAATGAAGAAGAACCTGGAGGTCACAGTGAAGGACCTGCAGCACCGTCTGGATGAGGCTGAGCAGCTGGCAATGAAGGGTGGAAAGAAGCAGCTCCAGAAACTGGAGGCCAGGGTGCGTGAGCTGGAAAATGAACTGGAAGCCGAGCAACGACGTGGAGCCGATGCCATTAAAGGTCTCCGCAAATATGAGAGAAGAGTCAAGGAGCTCACCTACCAGGCTGAGGAGGACAAGAAGAATGTGAACAGACTCCAGGATCTGGTTGACAAGCTGCAGCTCAAAGTGAAGGCTTACAAGAGACAGGCTGAAGAAGCTGAGGAACAAGTCAATACCCATCTCTCCAAGTTCAGGAAGGCACAGCATGAGCTGGAAGAATCTGAGGAGCGTGCAGACATCGCTGAATCCCAGGTCAACAAGCTGAGAATCAAGAGCCGTGAAATGACGAAggtcAAAGAAGGAGAATGAAGGAAAACCAAGTACATGTACCGAAAGGATTCATACAATATGAATCATATACTCTAAACGTTTCATTCAGCTCTTGATAAAAAGTAGTCTACTTGCATCCTA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0032982 myosin filament cellular_component
GO:0030016 myofibril cellular_component
GO:0005516 calmodulin binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0003774 motor activity molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52826 lncRNA downstream 38433 21209265 ~ 21209649 (-) True G42378
TU52824 lncRNA downstream 52732 21194149 ~ 21195350 (-) True G42376
TU52672 lncRNA downstream 357794 20889683 ~ 20890288 (-) True G42278
TU52673 lncRNA downstream 357794 20889683 ~ 20890288 (-) False G42278
TU52621 lncRNA downstream 573854 20666345 ~ 20674228 (-) True G42242
TU52820 lncRNA upstream 23838 21287320 ~ 21310348 (-) True G42372
TU52830 lncRNA upstream 77488 21340970 ~ 21427716 (-) True G42382
TU52831 lncRNA upstream 82993 21346475 ~ 21346834 (-) True G42383
TU52834 lncRNA upstream 136162 21399644 ~ 21400158 (-) True G42386
TU52822 lncRNA upstream 185410 21448892 ~ 21449281 (-) False AMCG00013131
AMCG00013106 mRNA downstream 151663 21079606 ~ 21096419 (-) True AMCG00013106
AMCG00013102 mRNA downstream 262197 20984036 ~ 20985885 (-) True AMCG00013102
AMCG00013103 mRNA downstream 394018 20841618 ~ 20854064 (-) True AMCG00013103
AMCG00013097 mRNA downstream 488080 20747489 ~ 20760002 (-) True AMCG00013097
AMCG00013096 mRNA downstream 513813 20685271 ~ 20734269 (-) True AMCG00013096
AMCG00013117 mRNA upstream 6867 21270349 ~ 21278662 (-) True AMCG00013117
AMCG00013111 mRNA upstream 23664 21287146 ~ 21289069 (-) True AMCG00013111
AMCG00013112 mRNA upstream 36611 21300093 ~ 21311306 (-) True AMCG00013112
AMCG00013113 mRNA upstream 64718 21328200 ~ 21335131 (-) True AMCG00013113
AMCG00013110 mRNA upstream 72675 21336157 ~ 21338083 (-) True AMCG00013110
TU52536 other downstream 702271 20531194 ~ 20545811 (-) True AMCG00013090
TU52412 other downstream 1265202 19980336 ~ 19982880 (-) True G42076
TU52331 other downstream 2176664 19068245 ~ 19071418 (-) True AMCG00013070
TU52316 other downstream 2225304 18977060 ~ 19022778 (-) False AMCG00013071
TU52315 other downstream 2249316 18977060 ~ 18998766 (-) True AMCG00013071
TU52828 other upstream 42704 21306186 ~ 21307693 (-) False AMCG00013112
TU52819 other upstream 72735 21336217 ~ 21517177 (-) True G42371
TU52829 other upstream 73585 21337067 ~ 21375763 (-) True G42381
TU52823 other upstream 87178 21350660 ~ 21360107 (-) True G42375
TU52821 other upstream 148457 21411939 ~ 21414964 (-) False AMCG00013137

Expression Profile