RNA id: AMCG00013115


Basic Information

Item Value
RNA id AMCG00013115
length 3957
RNA type mRNA
GC content 0.49
exon number 30
gene id AMCG00013115
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21351263 ~ 21375164 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTACGGACGCGGAGATGGCTGTTTTTGGCCCGGCTGCCATATACCTGAGGAagcctgagagggagagaatagAAGCACAAAGCAGACCATTTGATGCCAAAACTGCCTGCTATGTAACTGATGTCAAGGAGCTGTACGTCAAAGGTGTTCTCCAAAGTAAAGAAGGGGGCAAAGCCACTGTCAAGACTGAGGCTGGCCAAACTGTCACAGTCAAGGAGGATGACGTCTTCCCAATGAATCCTCCCAAGTACGACAAAATTGAGGACATGGCGATGATGACCCACCTGAATGAAGCCTCTGTGCTGTATAACCTCAAAGAGCGTTACGCAGCATGGATGATTTAcACCTATTCTGGGCTGTTTTGTGCAACGGTGAATCCCTACAAGTGGCTCCCAGTGTACAATCAAGAAGTTGTGACAGCATATAGAGGCAAAAAGCGCATGGAGGCTCCACCACACATCTTCTCTGTCTCTGATAATGCCTATCAGAACATGCTCACTgatcGTGAAAACCAGTCAATCCTGATTACTGGAGAATCTGGTGCTGGAAAGACTGTGAACACGAAACGTGTCATCCAGTACTTTGCGACAATCGCAGTGTCCGGGGACAAAAAGAAGGAGACACAGCCTGGAAAAATACAGGGAACCCTGGAGGATCAAATAATCTCAGCCAACCCTCTGCTGGAGGCTTTCGGTAACGCCAAGACAGTGAGGAATGACAACTCCTCTCGCTTTGGTAAATTCATCAGAATTCACTTCGGAAGCACAGGAAAACTGGCTTCTGCTGACATTGAGACTTACTTGCTGGAGAAGTCCAGAGTAACATTCCAGCTGTCTGATGAAAGGAGCTACCACATCTTTTATCAGATCATGACCAACCACAAGCCAGAGCTCATTGATATGCTTCTGATCACAACCAATCCCTATGACTTCCCTATGATCAGCCAGGGTCAGATTACTGTGGCCAGCATAGATGACAAAGAGGAGCTGGTTGCCACAGATGTCAACAATGCAGTTGGTGCCCTGTCCAAATCAGTCTATGAGAAATTGTTCTTGTGGATGGTTGTCCGCATAAACCAGATGCTGGATACCAAGCAGTCCAGACAGAGCTACATTGGTGTGCTGGATATTGCTGGATTTGAGATCTTTGATAGTGGAAAGAAGGGTGCCAAGAAGAAGGGTGGCTCCTTTCAGACGGTGTCTTGTCTCTTCAGgGAGAACTTGGGCAAGCTGATGACCAACTTGAGGAGCACACATCCTCACTTTGTGCGTTGCTTGATTCCCAATGAATCGAAGACACCAGGTACTGTCAACATGCTTTACATAAACAAGAAATGTTCGGAGAAGCTCTTGGCATCCATTGATGTAGACCAAACTCAGTATAAATTTGGACACACTAAGGTGTTCTTCAAAGCTGGTCTGCTGGGTACACTTGAGGAGATGCGAGATGAAAAACTGGCCGCGCTCATCACTAACACGCAGGCTCTTTGCCGTGGCTTCCTCATGAGAAAGGAATTTGTGAAGATGATGGAAAGAAGAGAGTCCATCTTCTCCATCCAATACAATATCCGCTCATTCATGAATGTGAAACACTGGCCATGGATGAAGCTATACTTCAAGATCAAGCCACTTCTGAAGAGTGCAGAATCAGAGAAGGAAATGGCCAACATGAAGGAAGAATTTACCAAGTGCAAGGAAGATCTGGCAAAGGCAGAAGCCAGGAAAAAGGACCTTGAAGAGAAAATGGTATCTCTAATGCAGGAGAAGAATGACCTGCTGCTACAAGTCCAATCTctTGAGGGATCACTGGAGCAAGAGAAGAAAGTCCGAATGGACCTTGAGAGGTCCAAGAGAAAGCTGGAGGGTGATCTGAAACTAGCCCAGGAATCCATAATGGATctggaaaatgacaaacaacagTCAGATGAAAAAATCAAGAAGAAGGACTTTGAAACCAGTCAGCTTCTTAGCAAGATTGAAGATGAACAAGTTCTGGGTGCTCAGCTGCAGAAGAAGATTAAGGAGCTCCAGGCTCGCATTGAGGAACTGGAAGAGGAAATTGAGGCTGAACGTGCTGCTCGTGCAAAGATTGAGAAGCAGAGGGCTGATCTCTCCAGGGAACTTGAGGAGATCAGTGAAAGGCTTGAAGAAGCTGGTGGTGCCACTTCTGCTCAGATTGAGATGAACAAGAAACGTGAAGCTGAGTTCCAGAAGCTCCGCCGCGACCTTGAAGAGTCGACTCTGCAGCACGAGGCCACCGCTGCTGCCCTCCGCAAGAAGCAGGCCGACAGCGTGGCAGAATTAGGAGAACAGATTGACAACCTTCAGCGGGTCAAGCAGAAGCTGGAGAAGGAAAAGAGcgaatacaaaatggaaatcGATGACCTCTCCAGCAATATGGAGTCTGTAGCCAAGTCTAAGGCTAATCTGGAGAAGATGTGCCGTACTCTGGAGGACCAACTCAGTGAACTCAAGGCTAAGAGTGATGAAAACACACGCCAGATAAATGACCTCAGTGGTCAAAAAGCACGTCTGCAAACTGAGAATGGTGAATTTGCACGCCAACTGGAAGAGAAAGAAGCTATGGTATCCCAACTGACAAGAGGGAAACAGGCCTATACTCAACAAATTGAGGAGTTGAAGAGGCATATGGAAGAGGAAACCAAGgccAAGAGTGCCCTGGCTCATGCTTTACAATCAGCTCGCCATGACTGTGACCTGCTCCGGGAGCAATatgaggaggagcaggaggccaAGGCTGAGCTTCAGCGTGGAATGTCTAAGGCCAACAGTGAAGTGGCTCAGTGgagaacaaaatatgaaactgaTGCCATCCAGCGCACTGAGGAGCTTGAGGAAGCCAAGAAAAAGCTTGCTCAGCGCCTGCAAGATGCTGAGGAACAGATTGAGGCTGTGAACTCCAACCATGCCAACCGCCAGGCTGCCGAGGCCCAGAAACAACTGAGGAACATCCAAGGACAACTCAAGgatGCCCTATTGCACCTGGATGATGCTCTTAGAGGACAGGAGGACATGAAGGAACAGGTTGCCATGGTGGAGCGCAGGAACACCCTCATGATGGCTGAGATTGAGGAAATGAGGGCTGCCCTggaacagacagagagagcacgCAAAGTGGCTGAACAGGAACTGGTTGACACCAGTGAGCGTGTGCAGCTGCTGCACTCCCAGaataCAAGTCTTATTAACACCAAGAAGAAGCTTGAGAGTGACATTGCTCAACTACAAGGTGAAGTTGATGACACCATCCAGGAAGCAAGAAATGCAGAAGAAAAGGCCAAGAAGGCAATTACTGATGCTGCTATGATGGCTGAGGAGCTGAAGAAGGAGCAGGACACCAGCTCTCACCTGGAGAGAATGAAGAAGAACCTGGAGGTCACAGTGAAGGACCTGCAGCACCGTCTGGATGAGGCTGAGCAGCTGGCAATGAAGGGTGGAAAGAAGCAGCTCCAGAAACTGGAGGCCAGGGTGCGTGAGCTGGAGAATGAGTTTGAAGCTGAACAAAGACGTGGAGCTGAAGCCATTAAAGGAGTCCGTAAATATGAGAGAAGAGTCAAGGAGCTCTCCTACCAGGCTGAGGAGGACAAGAAGAATGTGAACAGACTCCAGGATCTGGTTGACAAGCTGCAGCTCAAAGTGAAGGCTTACAAGAGACAGGCTGAGGAGGCTAGCATTCACGAGCTGGAGAAGGCAAAGAAGCAGGTGGAGACAGAAAAGTCTGAAATTCAAATTGCACTGGAAGAGGCTGAGGATGCCCAACTGCACCTTGATGATGCTCTTAGAGGACAGGAGGACATCAAGGAACAGGTTGCCATAGTGGCTGAGACTGAGGAAATGAGGGCTGCCCTggaacagacagagagaggccgCAAAGTGGCTGAACAGGAACTGGTTGATGCCAGTGAGCGTGTGCAGCTGCTGCACTCAGgttga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52831 lncRNA downstream 4429 21346475 ~ 21346834 (-) True G42383
TU52820 lncRNA downstream 40915 21287320 ~ 21310348 (-) True G42372
TU52826 lncRNA downstream 141614 21209265 ~ 21209649 (-) True G42378
TU52824 lncRNA downstream 155913 21194149 ~ 21195350 (-) True G42376
TU52673 lncRNA downstream 460975 20889683 ~ 20890288 (-) False G42278
TU52834 lncRNA upstream 24480 21399644 ~ 21400158 (-) True G42386
TU52822 lncRNA upstream 73728 21448892 ~ 21449281 (-) False AMCG00013131
TU52907 lncRNA upstream 518460 21893624 ~ 21905597 (-) True G42440
TU52919 lncRNA upstream 774417 22149581 ~ 22149792 (-) True G42450
TU53044 lncRNA upstream 1199394 22574558 ~ 22574827 (-) True G42544
AMCG00013116 mRNA downstream 449 21350459 ~ 21350814 (-) True AMCG00013116
AMCG00013110 mRNA downstream 13180 21336157 ~ 21338083 (-) True AMCG00013110
AMCG00013113 mRNA downstream 16132 21328200 ~ 21335131 (-) True AMCG00013113
AMCG00013112 mRNA downstream 39957 21300093 ~ 21311306 (-) True AMCG00013112
AMCG00013111 mRNA downstream 62194 21287146 ~ 21289069 (-) True AMCG00013111
AMCG00013138 mRNA upstream 19112 21394276 ~ 21398255 (-) True AMCG00013138
AMCG00013137 mRNA upstream 37202 21412366 ~ 21422118 (-) True AMCG00013137
AMCG00013131 mRNA upstream 73165 21448329 ~ 21449954 (-) True AMCG00013131
AMCG00013136 mRNA upstream 76868 21452032 ~ 21454895 (-) True AMCG00013136
AMCG00013132 mRNA upstream 93865 21469029 ~ 21474368 (-) True AMCG00013132
TU52828 other downstream 43570 21306186 ~ 21307693 (-) False AMCG00013112
TU52810 other downstream 49842 21252107 ~ 21301421 (-) True G42366
TU52536 other downstream 805452 20531194 ~ 20545811 (-) True AMCG00013090
TU52412 other downstream 1368383 19980336 ~ 19982880 (-) True G42076
TU52331 other downstream 2279845 19068245 ~ 19071418 (-) True AMCG00013070
TU52821 other upstream 36775 21411939 ~ 21414964 (-) False AMCG00013137
TU52837 other upstream 136920 21512084 ~ 21514693 (-) False AMCG00013133
TU53293 other upstream 2468919 23844083 ~ 23847477 (-) True G42749
TU53481 other upstream 3506955 24882119 ~ 24902428 (-) True AMCG00013204
TU53519 other upstream 3650712 25025876 ~ 25029004 (-) False AMCG00013216

Expression Profile