RNA id: AMCG00013117


Basic Information

Item Value
RNA id AMCG00013117
length 321
RNA type mRNA
GC content 0.52
exon number 4
gene id AMCG00013117
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21270349 ~ 21278662 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGTCGGCCTGCTTCTTACGGAGGGCAGCAGCGGTGGCCTCGTGCTGGAGAGTCGACTCTTCGAGTTTCTGGAGCTGCTTCTTTCCACCCTTCATTGCCAGCTGCTCAGCCTCATCCAAACGGTGCTGCAGGTCCTTCACTGTGACCTCCAAGTTCTTCTTCATTCTCTCCAGTGTCATCAACTTCACCTTGGAGCTGAGAGATGTCACTCTCAAGCTTCTTCTTGACTTGGCTACAGACTCCATGTTGCTGGAGAGGTCGTCgatttccattttgtattcactcttctccttctccagcttctGCTTGACCCGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52826 lncRNA downstream 60700 21209265 ~ 21209649 (-) True G42378
TU52824 lncRNA downstream 74999 21194149 ~ 21195350 (-) True G42376
TU52672 lncRNA downstream 380061 20889683 ~ 20890288 (-) True G42278
TU52673 lncRNA downstream 380061 20889683 ~ 20890288 (-) False G42278
TU52621 lncRNA downstream 596121 20666345 ~ 20674228 (-) True G42242
TU52820 lncRNA upstream 8658 21287320 ~ 21310348 (-) True G42372
TU52830 lncRNA upstream 62308 21340970 ~ 21427716 (-) True G42382
TU52831 lncRNA upstream 67813 21346475 ~ 21346834 (-) True G42383
TU52834 lncRNA upstream 120982 21399644 ~ 21400158 (-) True G42386
TU52822 lncRNA upstream 170230 21448892 ~ 21449281 (-) False AMCG00013131
AMCG00013114 mRNA downstream 6867 21248082 ~ 21263482 (-) True AMCG00013114
AMCG00013106 mRNA downstream 173930 21079606 ~ 21096419 (-) True AMCG00013106
AMCG00013102 mRNA downstream 284464 20984036 ~ 20985885 (-) True AMCG00013102
AMCG00013103 mRNA downstream 416285 20841618 ~ 20854064 (-) True AMCG00013103
AMCG00013097 mRNA downstream 510347 20747489 ~ 20760002 (-) True AMCG00013097
AMCG00013111 mRNA upstream 8484 21287146 ~ 21289069 (-) True AMCG00013111
AMCG00013112 mRNA upstream 21431 21300093 ~ 21311306 (-) True AMCG00013112
AMCG00013113 mRNA upstream 49538 21328200 ~ 21335131 (-) True AMCG00013113
AMCG00013110 mRNA upstream 57495 21336157 ~ 21338083 (-) True AMCG00013110
AMCG00013116 mRNA upstream 71797 21350459 ~ 21350814 (-) True AMCG00013116
TU52536 other downstream 724538 20531194 ~ 20545811 (-) True AMCG00013090
TU52412 other downstream 1287469 19980336 ~ 19982880 (-) True G42076
TU52331 other downstream 2198931 19068245 ~ 19071418 (-) True AMCG00013070
TU52316 other downstream 2247571 18977060 ~ 19022778 (-) False AMCG00013071
TU52315 other downstream 2271583 18977060 ~ 18998766 (-) True AMCG00013071
TU52828 other upstream 27524 21306186 ~ 21307693 (-) False AMCG00013112
TU52819 other upstream 57555 21336217 ~ 21517177 (-) True G42371
TU52829 other upstream 58405 21337067 ~ 21375763 (-) True G42381
TU52823 other upstream 71998 21350660 ~ 21360107 (-) True G42375
TU52821 other upstream 133277 21411939 ~ 21414964 (-) False AMCG00013137