RNA id: AMCG00013131


Basic Information

Item Value
RNA id AMCG00013131
length 846
RNA type mRNA
GC content 0.50
exon number 7
gene id AMCG00013131
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21448329 ~ 21449954 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGTCTGTAGCCAAGTCTAAGGCTAATCTGGAGAAGATGTGCCGTACTCTGGAGGACCAACTCAGTGAACTCAAGGCTAAGAGTGATGAGAACTCACGCCAGATTAATGACCTCAGTGGTCAAAAAGCACGTCTGCAAACTGAGAATGGTGAATTTGGACGCCAGCTGGAAGAGAAAGAAGCTCTCGTATCCCAGCTAACAAGAGGAAAGCAGGCCTACACTCAACAAATTGAAGAGTTGAAGAGGCAAATGGAAGAGGAAACAAAGgccAAGAATGCTCTGGCTCATGGTTTACAATCAGCCCGCCATGACTGTGACCTGCTCCGGGAGCAATatgaggaggagcaggaggccaAGGCTGAGCTTCAGCGTGGAATGTCCAAGGCCAATAGTGAAGTGGCTCAGTGGAGAACAAAATACGAAACTGACGCCATCCAGCGCACTGAGGAGCTTGAGGAAGCCAAGAAAAAGCTTGCCCAGCGCCTGCAAGATGCAGAGGAACAAATTGAGGCTGTGAACTCCAAGTGCGCCTCTCTGGAAAAGACCAAGCAGAGGTTGCAGGGTGAGGTGGAAGACCTCATGATTGATGTGGAGAGAGCAAATGCCCAGGCTGCCAACCTTGACAAGAAGCAGAGGAACTTTGACAAGGTTCTCGCAGAATGGAAGCAGAAGTTTGAGGAGGGCCAGGCAGAGCTGGAGGCGGCTCAGAAAGAGGCTCGCTCTCTCAGCACTGAACTTTTCAAGATGAAGAACTCCTATGAAGAGGCTCTGGATCATCTTGAGACCCTTAAACGAGAGAATAAGAACTTGCAGCAGGAGATCTCAGACCTCACTGAACAGATT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0003774 motor activity molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52830 lncRNA downstream 20613 21340970 ~ 21427716 (-) True G42382
TU52834 lncRNA downstream 48171 21399644 ~ 21400158 (-) True G42386
TU52831 lncRNA downstream 101495 21346475 ~ 21346834 (-) True G42383
TU52820 lncRNA downstream 137981 21287320 ~ 21310348 (-) True G42372
TU52826 lncRNA downstream 238680 21209265 ~ 21209649 (-) True G42378
TU52907 lncRNA upstream 443670 21893624 ~ 21905597 (-) True G42440
TU52919 lncRNA upstream 699627 22149581 ~ 22149792 (-) True G42450
TU53044 lncRNA upstream 1124604 22574558 ~ 22574827 (-) True G42544
TU53058 lncRNA upstream 1256112 22706066 ~ 22706337 (-) True G42553
TU53062 lncRNA upstream 1366202 22816156 ~ 22816369 (-) True G42557
AMCG00013137 mRNA downstream 26211 21412366 ~ 21422118 (-) True AMCG00013137
AMCG00013138 mRNA downstream 50074 21394276 ~ 21398255 (-) True AMCG00013138
AMCG00013115 mRNA downstream 73165 21351263 ~ 21375164 (-) True AMCG00013115
AMCG00013116 mRNA downstream 97515 21350459 ~ 21350814 (-) True AMCG00013116
AMCG00013110 mRNA downstream 110246 21336157 ~ 21338083 (-) True AMCG00013110
AMCG00013136 mRNA upstream 2078 21452032 ~ 21454895 (-) True AMCG00013136
AMCG00013132 mRNA upstream 19075 21469029 ~ 21474368 (-) True AMCG00013132
AMCG00013134 mRNA upstream 38327 21488281 ~ 21492981 (-) True AMCG00013134
AMCG00013133 mRNA upstream 53895 21503849 ~ 21526832 (-) True AMCG00013133
AMCG00013139 mRNA upstream 77319 21527273 ~ 21529046 (-) True AMCG00013139
TU52821 other downstream 33365 21411939 ~ 21414964 (-) False AMCG00013137
TU52829 other downstream 72566 21337067 ~ 21375763 (-) True G42381
TU52823 other downstream 88222 21350660 ~ 21360107 (-) True G42375
TU52828 other downstream 140636 21306186 ~ 21307693 (-) False AMCG00013112
TU52810 other downstream 146908 21252107 ~ 21301421 (-) True G42366
TU52837 other upstream 62130 21512084 ~ 21514693 (-) False AMCG00013133
TU53293 other upstream 2394129 23844083 ~ 23847477 (-) True G42749
TU53481 other upstream 3432165 24882119 ~ 24902428 (-) True AMCG00013204
TU53519 other upstream 3575922 25025876 ~ 25029004 (-) False AMCG00013216
TU53623 other upstream 3625439 25075393 ~ 25078244 (-) True G43001

Expression Profile