RNA id: AMCG00013133


Basic Information

Item Value
RNA id AMCG00013133
length 5133
RNA type mRNA
GC content 0.47
exon number 38
gene id AMCG00013133
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21503849 ~ 21526832 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGGCCACGCTGGAGCAAACGAACAGAAGCCACAGGCTGGCTGAGCAGGAGCTGACAGATGCTAGCACAATTAACTTGAATTCTATCTTTCTTAAAAAACCCTTACAGAACACAAGCCTCATCAACACCAAAAAGAAACTGGAATCAGACATCATTCAGCTACAGGTTGAAGCTGAAGAGACACTTCAAGAAGCAAGCAATCCTgatgagaaactgaaaaaagcCATCACTAGTGCCGCCATGATGGCTGAGGAGCTGAAGAAGGAGCAGGACACCAGCTCTCACCTGGAGACAATGAAGAAGAACCTGGAGGTCACAGTGAAGGACCTGCAGCACCGTCTGGATGAGGCTGAGCAGCTGGCAATGAAGGGTGGAAAGAAGCAGCTCCAGAAACTGGAGGCCAGGTTAGAGAACTGGAGAATGAGCTTGAAGCAGAGCAGAAACGTGGTCTGGAAGCGATCAAAGGTgtacataaatatgaaaaacaagtcAAAGAGCTCACATATCAGGAGAATCAAGCCAAGTTTGGGTTTCCCTAGTTTCTTGCCTGGCATCGGGGAAGCTGCAACAATGAGTTCGGATTCGGAGATGGCGGTTTTTGGCGAAGCTGCCAAATTCTTGCGCAAATCTGAAAAGGAAAGAATAGAGGCGCAAAACAAACCATTTGACGCCAAAACGGCTGTCTACGTAATCGAACCCAAGGAGCTCTATGTCAAAGGCATTCTCCAGAACAAAGAAGGGGGCAAAGCCACCGTGAAAACTGAAGCCGGGCAAACTCTAACAGTTAAGGAAGATCAAGTCTTCCCCATGAATCCTCCCAAGTTCGATAAAATTGAGGACATGGCGATGCTCACCCACCTCAATGAAGCCTCTGTGCTGTATAACCTCAAAGAGCGTTACGCAGCATGGATGATCTACACCTACTCTGGGCTCTTCTGTGTAACTGTGAACCCCTACAAGTGGCTCCCAGTGTACAATCAAGAAGTTGTGACAGCGTACAGAGGAAAAAAACGCCAAGAAGCTCCTCCTCACATCTTCTCCATCTCTGACAATGCCTATCAGTTCATGCTAACTGacAGGGAAAACCAGTCAATCCTGATTACTGGAGAATCTGGTGCTGGAAAGACTGTGAACACAAAACGTGTCATCCAGTACTTTGCGACAATCGCAGCGGCTGGGGACAAGAAAAAAGAGGGAACCCTGGAGGATCAAATCATTTCAGCCAATCCTCTGCTCGAAGCTTTTGGTAATGCCAAGACAGTGAGGAATGACAACTCCTCTCGCTTTGGTAAATTCATCAGAATCCACTTTGGCACCACAGGAAAACTGGCTTCTGCTGATATTGAAAcctattTGCTTGAAAAGTCTAGGGTGACATTCCAGCTTTCAGCAGAAAGAAGCTACCATATATTTTACCAGATTATgtccaacaaaaaaacagagctCATAGAAATGCTTCTCATCACCACCAATCCCTATGACTATCCCTTTGTTAGTCAAGGGGAGATCAGCGTCAGCAGTATTGATGACGGTGAGGAGTTGCTAGCCACAGATAGTGCTATTGACATTCTGGGGTTCACTGCAGAGGAGAAAGCTGGCATCTACAAGCTGACCGGTGCTGTAATGCACTACGGCAACATGAAGTTCAAGCAGAAGCAACGTGAAGAGCAGGCTGAGCCTGATGGCACTGAGgtggctGACAAAGCAGCGTACCTTATGGGTCTGAACTCGGCAGATTTACTCAAAGCCCTGTGCTATCCCAGAGTGAAAGTCGGAAATGAGTATGTGACAAAGGGGCAGACTGTTCAGCAGGTGTATAACTCAGTCGGCGCCCTGGGCAAATCTGTCTATGAGAAAATGTTCTTGTGGATGGTCGTTCGTATCAACCAGATGTTGGACACAAAACAGTCAAGACAGTTCTTCATTGGTGTCCTGGACATTGCAGGATTTGAGATTTTTGATGTGAGTAaaAGTAGTGGATCAAAGAAGGGTGGGAAGAAGAAGGGCTCTTCCTTTCAGACAGTATCTGCTCTCTTTAGGGAGAACCTGGGCAAGCTCATGACCAATTTAAGGAGCACCCATCCACACTTTGTCCGTTGCATCATTCCCAATGAGACCAAGACACCAGTATTGAATGCCAGTGCCATCCCAGATGGTCAGTTCATCGACAGCAAGAAAGCTTCAGAGAAGCTCTTGGGATCCATTGATGTAGATCACACTCAGTACAAATTTGGACACACCAAGGTATTCTTTAAAGCTGGTCTGTTGGGCACTCTTGAGGAGATGAGAGACGACAAATTGGCCGCTCTCATAACCAGCACCCAGGCTAGGTGTCGTGGTTTCTTGATGAGAGTTGAGTTTCAAAAGATGATGGAAAGGAGGGAGTCCATTTTCACCATCCAATACAACATCCGCTCATTCATGAATGTGAAACACTGGCCATGGATGAAGCTGTATTTCAAGATCAAGCCACTTTTAAGGAGTGCAGAAACCGAGAAGGAATTTGCGAACATGAAGGAAGAATTTGCAAAGTGCAAGGAAGAATTGGCGAAATCAGAAGCCAAGAGGAAGGAACTAGAAACCAAAATGGTGACGCTGCTACAGGAGAAGAATGACCTGCAATTGCAAGTCCAGGCTCTTGAAGGGTCACTGGAGCAAGAGAAGAAACTGCGAATGGACCTTGAGAGGGCCAAGAGAAAGCTGGAGGGTGATCTGAAACTAGCCCAGGAATCCATAATGGATCTGGAAAATGACAGGCAGCAAATGGAAGAAAGACTGAAAAAgAAGGACTTTGAAATAAGTCAGCTGCTTAGTAAAATTGAGGATGAGCAAGCATTGGGTTCCCAGcttcaaaagaaaattaagGAGCTGCAGGCACGCATTGAAGAGCTTGAGGAGGAAATTGAGGCAGAGCGTGCTTCCCGAGCAAAGACCGAAAAGCAAAGGTCTGATCTTGCAAGAGAGCTTGAGGAGATCAGTGAAAGGCTTGAAGAGGCTGGTGGTGCAACCTCGGCTCAGATTGAGATGAACAAGAAACGAGAAGCTGAGTTACAGAAGCTCCGCCGCGACCTTGAAGAGTCGACTCTGCAGCACGAGGCCACCGCTGCTGCCCTCCGCAAGAAGCAGGCCGACAGCGTGGCAGAATTAGGAGAACAGATTGACAACCTTCAGCGAGTCAAGCagaagctggagaaggagaagagtgAATACAAAATGGAGATTGATGACCTCTCCAGCAACATGGAGTCTGTTGCTAAATCAAAGgCAAATTATGAAAAGATGTGCCGTACTATGGAGGACCAGCTTAGTGAATTCAAGGCAAAGCACGATGAAAATATCCGTCAGATGAATGAAATCACTACTCAAAGGGCAAGGCTTCAGACAGAGAATGGTGAGTTTTCCCGCCAAATAGAAGAGAAggatgccttgatcagtcagaTGACAAGAAGCAAGGTTGCTTTCACTCAGCAAATTGAAGAACTAAAAAGGCAACTTGAAGAAGAAGTAAAGCAATATGAGGAAGAGCAGGAGGCCAAGACTGAGTTGCAGCGTTCACTGTCCAAGGCCAACAGTGAAGTGGCTCAGTGGAGAACAAAATATGAGACTGACGCCATCCAGCGCACTGAGGAGCTTGAGGAAGCCAAGAAAAAGCTTGCCCAACGCTTGCAAGACGCTGAGGAACAAATTGAGGCTGGGAACTCCAAGTGCGCCTCTCTGGAAAAGACCAAGCAGCGGCTGCAGGGTGAGGTGGAAGACCTCATGATTGATGTGGAGAGAGCAAACGCTCAAGCAGCTGCCCTTGATAAGAAGCAGAGGAATTTTGACAAGGTTCTGGCAGAATGGAAGCAGAAGTTTGAGGAGGGCCAGGCAGAGCTAGAAGCTTCCCAGAAAGAGGCTCGCTCCCTCAGCACTGAGCTTTTCAAGATGAAGAACTCCTATGAGGAAACGCTGGATCACCTTGAAACACTAAAACGAGAGAACAAGAACTTACAACAGGAGATCTCAGACCTTAGTGAACAGATTGGGGAAAACGGGAAAGTAATCCATGAGCTCGAAAAGTCCAAGAAGCAGGTGGAATTGGAAAAGATTGAAATTCAGACGGCCTTAGAGGAAGCTGAGGCATCTTTGGAACATGAAGAATCCAAGATGCTTCGTATCCAGCTTGAATTGAATCAAGTGAAGTCTGAAATAGACAGAAAGATTGCGGAGAAGGATGAGGAGATTGAGCAGATGAAGAGAAACAGCCAGAGGGTTATCGATCATATGCAAAGTGCACTTGATGCAGAAATCAGGAGCAGAAACGATGCCTTGAGAATTAAGAAGAAGATGGAGGGAGATCTCAATGAGATGGAAATCCAGCTCAGCCACGCCAACCGCCAGGCTGCTGAAGCCCAGAAACAACTGAGGAACGTCCAAGGACAACTTAAGGATGTCACAATTCACCTAGATGAGGCCTTAAGAAGCCAAGAGGACCTTAAGGAGCAGCTTGCTATGGTGGAGCGCAGGAACACCCTCATGATGGCTGAAATTGAGGAAATAAGAGCTGCCTTGGAACAGACTGAGAGAAGCCGCAAAGTGGCTGAGCAAGAATTGCTTGATGCCAGTGAGCGTGTGCAGCTGCTGCACTCCCAGAATACAAGTCTTatcaatacaaagaaaaaacttgAAGCTGACCTAGCTCAACTGCAAGGTGAAGTTGATGACAGCATCCAGGAAGCCAGGAATGCAGAAGAAAAAGCCAAGAAGGCTATTACTGATGCTGCTATGATGGCAGAGGAGCTGAAGAAGGAGCAGGACACCAGCTCTCACCTGGAGAGAATGAAGAAGAACCTGGAGGTCACAGTGAAGGACCTGCAGCACCGTCTGGATGAGGCTGAGCAGCTGGCAATGAAGGGTGGAAAGAAGCAGCTCCAGAAACTGGAGGCTCGGGTGCGTGAGCTGGAAAATGAACTGGAAGCCGAACAAAGGCGTGGAGCTGAGGCCATTAAAGGAGTGCGCAGATATGAGAGAAGGCTGAAGGAAATTACTTACCAGGCTGAGGAGGACAAGAAGAACGTTGTTAGACTCCAGGATCTGGTTGACAAGCTACAGCTGAAAGTGAAGTCTTACAAGAGACAGGCTGAGGAAGCT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0003774 motor activity molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52822 lncRNA downstream 54568 21448892 ~ 21449281 (-) False AMCG00013131
TU52830 lncRNA downstream 76133 21340970 ~ 21427716 (-) True G42382
TU52834 lncRNA downstream 103691 21399644 ~ 21400158 (-) True G42386
TU52831 lncRNA downstream 157015 21346475 ~ 21346834 (-) True G42383
TU52820 lncRNA downstream 193501 21287320 ~ 21310348 (-) True G42372
TU52907 lncRNA upstream 366792 21893624 ~ 21905597 (-) True G42440
TU52919 lncRNA upstream 622749 22149581 ~ 22149792 (-) True G42450
TU53044 lncRNA upstream 1047726 22574558 ~ 22574827 (-) True G42544
TU53058 lncRNA upstream 1179234 22706066 ~ 22706337 (-) True G42553
TU53062 lncRNA upstream 1289324 22816156 ~ 22816369 (-) True G42557
AMCG00013134 mRNA downstream 10868 21488281 ~ 21492981 (-) True AMCG00013134
AMCG00013132 mRNA downstream 29481 21469029 ~ 21474368 (-) True AMCG00013132
AMCG00013136 mRNA downstream 48954 21452032 ~ 21454895 (-) True AMCG00013136
AMCG00013131 mRNA downstream 53895 21448329 ~ 21449954 (-) True AMCG00013131
AMCG00013137 mRNA downstream 81731 21412366 ~ 21422118 (-) True AMCG00013137
AMCG00013139 mRNA upstream 441 21527273 ~ 21529046 (-) True AMCG00013139
AMCG00013143 mRNA upstream 2581 21529413 ~ 21531624 (-) True AMCG00013143
AMCG00013135 mRNA upstream 14601 21541433 ~ 21544389 (-) True AMCG00013135
AMCG00013141 mRNA upstream 19208 21546040 ~ 21549726 (-) True AMCG00013141
AMCG00013130 mRNA upstream 69243 21596075 ~ 21627396 (-) True AMCG00013130
TU52821 other downstream 88885 21411939 ~ 21414964 (-) False AMCG00013137
TU52829 other downstream 128086 21337067 ~ 21375763 (-) True G42381
TU52823 other downstream 143742 21350660 ~ 21360107 (-) True G42375
TU52828 other downstream 196156 21306186 ~ 21307693 (-) False AMCG00013112
TU52810 other downstream 202428 21252107 ~ 21301421 (-) True G42366
TU53293 other upstream 2317251 23844083 ~ 23847477 (-) True G42749
TU53481 other upstream 3355287 24882119 ~ 24902428 (-) True AMCG00013204
TU53519 other upstream 3499044 25025876 ~ 25029004 (-) False AMCG00013216
TU53623 other upstream 3548561 25075393 ~ 25078244 (-) True G43001
TU53641 other upstream 3637151 25163983 ~ 25166758 (-) False AMCG00013223

Expression Profile