RNA id: TU52837


Basic Information

Item Value
RNA id TU52837
length 650
RNA type TUCP
GC content 0.47
exon number 5
gene id AMCG00013133
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21503849 ~ 21526832 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGTGGATGGTCGTTCGTATCAACCAGATGTTGGACACAAAACAGTCAAGACAGTTCTTCATTGGTGTCCTGGACATTGCAGGATTTGAGATTTTTGATTACAATAGCTTGGAACAGCTGTGCATCAACTTCACCAATGAGAAACTGCAACAGTTCTTCAACCACCACATGTTTGTACTGGAACAAGAAGAGTACAAGAAGGAAGGAATTGAATGGGAGTTCATTGACTTCGGTATGGACTTGGCTGCCTGCATTGAGCTTATTGAGAAGCCCATGGGCATCTTCTCCATCCTTGAAGAGGAGTGCATGTTCCCCAAGGCATCAGACACAACCTTCAAGAACAAGCTCTATGACCAACATCTTGGCAAATCCAACAATTTCCAGAAACCCAAGCCTGCCAAAGGCAAGGCTGAGGCCCACTTCTCCCTGGTGCACTATGCCGGCACTGTGGACTACAATGTCACCGGATGGCTGGACAAGAACAAGGACCCCCTGAATGACACCGTGGTGGGGCTGTACCAGAAGGCTGCCTTGAAACTGTTGTGTTTACTCTATTCCACCTATTCTTCTACTGAAGaaAGTAGTGGATCAAAGAAGGGTGGGAAGAAGAAGGGCTCTTCCTTTCAGACAGTATCTGCTCTCTTTAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52822 lncRNA downstream 62803 21448892 ~ 21449281 (-) False AMCG00013131
TU52830 lncRNA downstream 84368 21340970 ~ 21427716 (-) True G42382
TU52834 lncRNA downstream 111926 21399644 ~ 21400158 (-) True G42386
TU52831 lncRNA downstream 165250 21346475 ~ 21346834 (-) True G42383
TU52820 lncRNA downstream 201736 21287320 ~ 21310348 (-) True G42372
TU52907 lncRNA upstream 378931 21893624 ~ 21905597 (-) True G42440
TU52919 lncRNA upstream 634888 22149581 ~ 22149792 (-) True G42450
TU53044 lncRNA upstream 1059865 22574558 ~ 22574827 (-) True G42544
TU53058 lncRNA upstream 1191373 22706066 ~ 22706337 (-) True G42553
TU53062 lncRNA upstream 1301463 22816156 ~ 22816369 (-) True G42557
AMCG00013134 mRNA downstream 19103 21488281 ~ 21492981 (-) True AMCG00013134
AMCG00013132 mRNA downstream 37716 21469029 ~ 21474368 (-) True AMCG00013132
AMCG00013136 mRNA downstream 57189 21452032 ~ 21454895 (-) True AMCG00013136
AMCG00013131 mRNA downstream 62130 21448329 ~ 21449954 (-) True AMCG00013131
AMCG00013137 mRNA downstream 89966 21412366 ~ 21422118 (-) True AMCG00013137
AMCG00013139 mRNA upstream 12580 21527273 ~ 21529046 (-) True AMCG00013139
AMCG00013143 mRNA upstream 14720 21529413 ~ 21531624 (-) True AMCG00013143
AMCG00013135 mRNA upstream 26740 21541433 ~ 21544389 (-) True AMCG00013135
AMCG00013141 mRNA upstream 31347 21546040 ~ 21549726 (-) True AMCG00013141
AMCG00013130 mRNA upstream 81382 21596075 ~ 21627396 (-) True AMCG00013130
TU52821 other downstream 97120 21411939 ~ 21414964 (-) False AMCG00013137
TU52829 other downstream 136321 21337067 ~ 21375763 (-) True G42381
TU52823 other downstream 151977 21350660 ~ 21360107 (-) True G42375
TU52828 other downstream 204391 21306186 ~ 21307693 (-) False AMCG00013112
TU52810 other downstream 210663 21252107 ~ 21301421 (-) True G42366
TU53293 other upstream 2329390 23844083 ~ 23847477 (-) True G42749
TU53481 other upstream 3367426 24882119 ~ 24902428 (-) True AMCG00013204
TU53519 other upstream 3511183 25025876 ~ 25029004 (-) False AMCG00013216
TU53623 other upstream 3560700 25075393 ~ 25078244 (-) True G43001
TU53641 other upstream 3649290 25163983 ~ 25166758 (-) False AMCG00013223

Expression Profile