RNA id: AMCG00013134


Basic Information

Item Value
RNA id AMCG00013134
length 1413
RNA type mRNA
GC content 0.46
exon number 13
gene id AMCG00013134
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21488281 ~ 21492981 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAGAATCTGGTGCTGGAAAGACTGTGAACACGAAACGTGTTATCCAGTACTTTGCAACAATCGCAGTGTCTGCAGACAAGAAGAAGGAGGCACAGCCTGGCAAAATGCAGGGAACCCTGGAGGATCAAATCATCTCAGCTAACCCTCTGCTGGAGGCTTTCGGTAACGCCAAGACAGTGAGGAATGACAACTCCTCTCGCTTTGGTAAATTCATCAGAATTCACTTTGGAACCACAGGAAAACTGGCATCTGCTGACATTGAGACTTATTTGCTGGAGAAGTCCAGAGTAACATTCCAGCTGTCTGATGAAAGGAGCTACCACATCTTTTATCAGATCATGACCAACCACAAGCCTGAGCTCATTGACATGCTTCTGATCACAACCAATCCCTATGATTTCCCTATGATCAGCCAGGGTCAGATCACTGTGGCCAGCATTGATGACAAAGAGGAGCTGGTTGCCACAGATACTGCCATTGATATTCTGGGCTTTAATAATGATGAGAAATTGGGCATCTACAAGCTGACTGGTGCAGTGATGCACTACGGTAACATGAAGTTCAAGCAGAAACAGCGTGAGGAGCAGGCAGAACCTGACGGCACAGAGGTTGGTGCCCTGTCTAAATCAGTGTATGAGAAATTATTCTTGTGGATGGTCATCCGCATTAACCAGATGTTGGACACCAAGCAGCCCAGACAGTTCTTCATTGGGGTGCTGGATATTGCTGGGTTTGAGATCTTCGATGTAAAATCTGGTGCTGGAAAGACTGTGAACACGAAACGTGTCATCCAGTACTTTGCAACAATCGCAGTGTCTGCAGACAAGAAGAAGGAGGCACAGCCTGGCAAAATACAGGGAACCCTGGAGGATCAAATCATCTCAGCTAACCCTCTGCTGGAGGCTTTTGGTAACGCCAAGACAGTGAGGAATGACAACTCCTCTCGTTTTGGTAAATTCATCAGAATTCACTTTGGAACCACAGGAAAACTGGCTTCTGCTGACATTGAGACTTACTTGCTGGAGAAGTCCAGAGTAACATTCCAGCTGTCTGATGAAAGGAGCTACCACATCTTTTATCAGATCATGACCAACCACAAGCCTGAGCTCATTGACATGCTTCTGATCACAACCAACCCCTATGATTTCCCTATGATCAGCCAGGGTCAGATCACTGTGGCCAGCATTGATGACAAAGAGGAGCTGGTTGCCACAGATACTGCCATTGATATTCTGGGCTTTAATAATGATGAGAAATTGGGCATCTACAAGCTGACTGGTGCTGTGATGCACTACGGTAACATGAAGTTCAAGCAGAAGCAACGTGAGGAGCAGGCAGAACCTGACGGCACAGAGGGTAAACTTCAGATTTACAAGTTACTTTATTATAACATATGGGATTTCTCACTACAA

Function

GO:

id name namespace
GO:0001757 somite specification biological_process
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52822 lncRNA downstream 39000 21448892 ~ 21449281 (-) False AMCG00013131
TU52830 lncRNA downstream 60565 21340970 ~ 21427716 (-) True G42382
TU52834 lncRNA downstream 88123 21399644 ~ 21400158 (-) True G42386
TU52831 lncRNA downstream 141447 21346475 ~ 21346834 (-) True G42383
TU52820 lncRNA downstream 177933 21287320 ~ 21310348 (-) True G42372
TU52907 lncRNA upstream 400643 21893624 ~ 21905597 (-) True G42440
TU52919 lncRNA upstream 656600 22149581 ~ 22149792 (-) True G42450
TU53044 lncRNA upstream 1081577 22574558 ~ 22574827 (-) True G42544
TU53058 lncRNA upstream 1213085 22706066 ~ 22706337 (-) True G42553
TU53062 lncRNA upstream 1323175 22816156 ~ 22816369 (-) True G42557
AMCG00013132 mRNA downstream 13913 21469029 ~ 21474368 (-) True AMCG00013132
AMCG00013136 mRNA downstream 33386 21452032 ~ 21454895 (-) True AMCG00013136
AMCG00013131 mRNA downstream 38327 21448329 ~ 21449954 (-) True AMCG00013131
AMCG00013137 mRNA downstream 66163 21412366 ~ 21422118 (-) True AMCG00013137
AMCG00013138 mRNA downstream 90026 21394276 ~ 21398255 (-) True AMCG00013138
AMCG00013133 mRNA upstream 10868 21503849 ~ 21526832 (-) True AMCG00013133
AMCG00013139 mRNA upstream 34292 21527273 ~ 21529046 (-) True AMCG00013139
AMCG00013143 mRNA upstream 36432 21529413 ~ 21531624 (-) True AMCG00013143
AMCG00013135 mRNA upstream 48452 21541433 ~ 21544389 (-) True AMCG00013135
AMCG00013141 mRNA upstream 53059 21546040 ~ 21549726 (-) True AMCG00013141
TU52821 other downstream 73317 21411939 ~ 21414964 (-) False AMCG00013137
TU52829 other downstream 112518 21337067 ~ 21375763 (-) True G42381
TU52823 other downstream 128174 21350660 ~ 21360107 (-) True G42375
TU52828 other downstream 180588 21306186 ~ 21307693 (-) False AMCG00013112
TU52810 other downstream 186860 21252107 ~ 21301421 (-) True G42366
TU52837 other upstream 19103 21512084 ~ 21514693 (-) False AMCG00013133
TU53293 other upstream 2351102 23844083 ~ 23847477 (-) True G42749
TU53481 other upstream 3389138 24882119 ~ 24902428 (-) True AMCG00013204
TU53519 other upstream 3532895 25025876 ~ 25029004 (-) False AMCG00013216
TU53623 other upstream 3582412 25075393 ~ 25078244 (-) True G43001

Expression Profile