RNA id: AMCG00013135


Basic Information

Item Value
RNA id AMCG00013135
length 1044
RNA type mRNA
GC content 0.44
exon number 6
gene id AMCG00013135
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21541433 ~ 21544389 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTGCGTACGCCGTGTTTGTACCCAGAAATTGGTGagggtatttgtatttgtgatgaACAGGTCAGGtcctccacccccaccctgtGCAGTACAGGGCCACACTCCGCACAGCATCATGGGGCTCGGTGTCTCTCCTCATTGCGCCCGCCACCTCCATCTGGAGACAAGACGAGCAAGTCTGGGCCTGTGACATGGAAATCTTTGGCTTTGACATTTGCAATTGGTGGCACAATTCTGGCAGGAATGAAAtacttcaaaaaagaaaaagaagaaataATTGAACAGAAAAGGACAAAGTCTTTGGGGAAGGCTGCTCTGGGAGGTCCCTTCTCTCTCGTTGACCACAACAATCAGCCAAAGAAAAGTGAAGATTTCTTGGGCCAGTGGATTCTCATCTACTTTGGCTTCACCCACTGCCCTGACATCTGTCCCGACGAGCTGGAGAAAATGATTGAAGCAGTGGATGAGATAGacaGAATACCTTCGCTTCCAAATGTAACTCCCCTGTTCGTCACCATTGACCCAGACAGGGATACCCCAGAGGCCATATCAAGATACGTAAAGGAGTTTTCTCCAAAGCTGATTGGATTGACTGGGACAACTGAACAAGTGGATGCAGTGTCCAGAGTTTACAGAGTATatcacagtcaagggccgaAAGACGAAGACAATGATTACATTgTGGACCACACAATAATCATGTATCTGGTGGACCCTGATGGGGAATTTGTGGAATATTATGGGCAGAACAAGAGAAGTGCAGAAATTGCAACTTCAATAGCTTCATATATGAGACAATATAAACAGAAGAAATAGGCTGTTCTCTCTCAAGTCGCATAATCATGCACATATATCCCCCTTACTCCCAACTCCATGTAGGCTGGTTTGTCAACTTCCTTAACCTAAAAACACTGATTGGGGGGGCATGTGCTTTTTGAAAGAAGGTTAATATTCCAGTTTGAACAATTTCCACATCTCAAATGCCATtcacaatacattatttcctgtcttacaaaaaggaaataaattatgGAACAATTA

Function

GO: NA

KEGG:

id description
K07152 SCO1; protein SCO1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52822 lncRNA downstream 92152 21448892 ~ 21449281 (-) False AMCG00013131
TU52830 lncRNA downstream 113717 21340970 ~ 21427716 (-) True G42382
TU52834 lncRNA downstream 141275 21399644 ~ 21400158 (-) True G42386
TU52831 lncRNA downstream 194599 21346475 ~ 21346834 (-) True G42383
TU52820 lncRNA downstream 231085 21287320 ~ 21310348 (-) True G42372
TU52907 lncRNA upstream 349235 21893624 ~ 21905597 (-) True G42440
TU52919 lncRNA upstream 605192 22149581 ~ 22149792 (-) True G42450
TU53044 lncRNA upstream 1030169 22574558 ~ 22574827 (-) True G42544
TU53058 lncRNA upstream 1161677 22706066 ~ 22706337 (-) True G42553
TU53062 lncRNA upstream 1271767 22816156 ~ 22816369 (-) True G42557
AMCG00013143 mRNA downstream 9809 21529413 ~ 21531624 (-) True AMCG00013143
AMCG00013139 mRNA downstream 12387 21527273 ~ 21529046 (-) True AMCG00013139
AMCG00013133 mRNA downstream 14601 21503849 ~ 21526832 (-) True AMCG00013133
AMCG00013134 mRNA downstream 48452 21488281 ~ 21492981 (-) True AMCG00013134
AMCG00013132 mRNA downstream 67065 21469029 ~ 21474368 (-) True AMCG00013132
AMCG00013141 mRNA upstream 1651 21546040 ~ 21549726 (-) True AMCG00013141
AMCG00013130 mRNA upstream 51686 21596075 ~ 21627396 (-) True AMCG00013130
AMCG00013144 mRNA upstream 380213 21924602 ~ 21935718 (-) True AMCG00013144
AMCG00013145 mRNA upstream 479587 22023976 ~ 22039234 (-) True AMCG00013145
AMCG00013150 mRNA upstream 748939 22293328 ~ 22312757 (-) True AMCG00013150
TU52819 other downstream 24256 21336217 ~ 21517177 (-) True G42371
TU52837 other downstream 26740 21512084 ~ 21514693 (-) False AMCG00013133
TU52821 other downstream 126469 21411939 ~ 21414964 (-) False AMCG00013137
TU52829 other downstream 165670 21337067 ~ 21375763 (-) True G42381
TU52823 other downstream 181326 21350660 ~ 21360107 (-) True G42375
TU53293 other upstream 2299694 23844083 ~ 23847477 (-) True G42749
TU53481 other upstream 3337730 24882119 ~ 24902428 (-) True AMCG00013204
TU53519 other upstream 3481487 25025876 ~ 25029004 (-) False AMCG00013216
TU53623 other upstream 3531004 25075393 ~ 25078244 (-) True G43001
TU53641 other upstream 3619594 25163983 ~ 25166758 (-) False AMCG00013223

Expression Profile