RNA id: AMCG00013137


Basic Information

Item Value
RNA id AMCG00013137
length 621
RNA type mRNA
GC content 0.50
exon number 5
gene id AMCG00013137
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21411939 ~ 21422118 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACACCAAGAAGAAGCTTGAGAGTGACATTGCTCAGCTCCAAGGTGAAGTTGATGACACCATCCAAGAAGCAAGAAATGCAGAAGAAAAGGCCAAGAAGGCTATTACTGATGCTGCCATGATGGCTGAGGAGCTGAAGAAGGAGCAGGACACCAGCTCTCACCTGGAGAGAATGAAGAAGAACCTGGAGGTCACAGTGAAGGACCTGCAGCACCGTCTGGATGAGGCTGAGCAGCTGGCAATGAAGGGTGGAAAGAAGCAGCTCCAGAAACTGGAGTCCAGGGTGCGTGAGCTGGAGAATGAGCTTGAAGCTGAACAAAGACGTGGAGTCGATGCTATAAAAGGTGTCCGTAAATACGAGAGAAGAGTGAAGGAGCTCTCCTACCAGGCTGAGGAGGACAAGAAGAATGTGAACAGACTCCAGGATCTGGTTGACAAGCTGCAGCTCAAAGTGAAGGCTTACAAGAGACAGGCTGAGGAAGCTGTGTTCTTTAAAGCTGGTCTGCTGGGTACCCTTGAGGAGATGCGAGATGAAAAACTGGCCGCGCTCATCACTAACACGCAGGCTCTTTGCCGTGGCTTTGTCATGAGAAAGGAATTTGTGAAGATGATGGAAAGG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0001757 somite specification biological_process
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0003774 motor activity molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52834 lncRNA downstream 12208 21399644 ~ 21400158 (-) True G42386
TU52831 lncRNA downstream 65532 21346475 ~ 21346834 (-) True G42383
TU52820 lncRNA downstream 102018 21287320 ~ 21310348 (-) True G42372
TU52826 lncRNA downstream 202717 21209265 ~ 21209649 (-) True G42378
TU52824 lncRNA downstream 217016 21194149 ~ 21195350 (-) True G42376
TU52822 lncRNA upstream 26774 21448892 ~ 21449281 (-) False AMCG00013131
TU52907 lncRNA upstream 471506 21893624 ~ 21905597 (-) True G42440
TU52919 lncRNA upstream 727463 22149581 ~ 22149792 (-) True G42450
TU53044 lncRNA upstream 1152440 22574558 ~ 22574827 (-) True G42544
TU53058 lncRNA upstream 1283948 22706066 ~ 22706337 (-) True G42553
AMCG00013138 mRNA downstream 14111 21394276 ~ 21398255 (-) True AMCG00013138
AMCG00013115 mRNA downstream 37202 21351263 ~ 21375164 (-) True AMCG00013115
AMCG00013116 mRNA downstream 61552 21350459 ~ 21350814 (-) True AMCG00013116
AMCG00013110 mRNA downstream 74283 21336157 ~ 21338083 (-) True AMCG00013110
AMCG00013113 mRNA downstream 77235 21328200 ~ 21335131 (-) True AMCG00013113
AMCG00013131 mRNA upstream 26211 21448329 ~ 21449954 (-) True AMCG00013131
AMCG00013136 mRNA upstream 29914 21452032 ~ 21454895 (-) True AMCG00013136
AMCG00013132 mRNA upstream 46911 21469029 ~ 21474368 (-) True AMCG00013132
AMCG00013134 mRNA upstream 66163 21488281 ~ 21492981 (-) True AMCG00013134
AMCG00013133 mRNA upstream 81731 21503849 ~ 21526832 (-) True AMCG00013133
TU52829 other downstream 36603 21337067 ~ 21375763 (-) True G42381
TU52823 other downstream 52259 21350660 ~ 21360107 (-) True G42375
TU52828 other downstream 104673 21306186 ~ 21307693 (-) False AMCG00013112
TU52810 other downstream 110945 21252107 ~ 21301421 (-) True G42366
TU52536 other downstream 866555 20531194 ~ 20545811 (-) True AMCG00013090
TU52837 other upstream 89966 21512084 ~ 21514693 (-) False AMCG00013133
TU53293 other upstream 2421965 23844083 ~ 23847477 (-) True G42749
TU53481 other upstream 3460001 24882119 ~ 24902428 (-) True AMCG00013204
TU53519 other upstream 3603758 25025876 ~ 25029004 (-) False AMCG00013216
TU53623 other upstream 3653275 25075393 ~ 25078244 (-) True G43001

Expression Profile