RNA id: TU52821


Basic Information

Item Value
RNA id TU52821
length 584
RNA type TUCP
GC content 0.46
exon number 6
gene id AMCG00013137
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21411939 ~ 21422118 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGGTGGTGGAAAGAAGGGTGGCAAGAAGAAGGGTGGCTCCTTTCAGACGGTTTCTTGTCTATTCAGGGAGAACTTGGGCAAGCTGATGAGCAACTTGAGGAGCACACATCCTCACTTTGTGCGTTGTTTGATTCCCAATGAATCAAAGACACCAGgtcTCATGGAAAACTTCCTAGTTATCCACCAGTTGAGGTGCAATGGTGTGCTAGAAGGTATCAGAATTTGCAGGAAAGGTTTCCCAAGCAGAATCCTCTATGGAGACTTCAAGCAAAGATACAAAGTATTGAATGCCAGTGCCATTCCAGAGGGTCAGTTCATTGACAGCAAGAAATGTTCAGAGAAGCTCTTGGGATCCATTGATGTAGACCACACCCAGTATAAATTTGGACACACTAAGGTGTTCTTTAAAGCTGGTCTGCTGGGTACCCTTGAGGAGATGCGAGATGAAAAACTGGCCGCGCTCATCACTAACACGCAGGCTCTTTGCCGTGGCTTTGTCATGAGAAAGGAATTTGTGAAGATGATGGAAAGGAGAGAATCCATCTTCTCCATCCAATACAACATCCGCTCATTCATGAATGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52834 lncRNA downstream 11781 21399644 ~ 21400158 (-) True G42386
TU52831 lncRNA downstream 65105 21346475 ~ 21346834 (-) True G42383
TU52820 lncRNA downstream 101591 21287320 ~ 21310348 (-) True G42372
TU52826 lncRNA downstream 202290 21209265 ~ 21209649 (-) True G42378
TU52824 lncRNA downstream 216589 21194149 ~ 21195350 (-) True G42376
TU52822 lncRNA upstream 33928 21448892 ~ 21449281 (-) False AMCG00013131
TU52907 lncRNA upstream 478660 21893624 ~ 21905597 (-) True G42440
TU52919 lncRNA upstream 734617 22149581 ~ 22149792 (-) True G42450
TU53044 lncRNA upstream 1159594 22574558 ~ 22574827 (-) True G42544
TU53058 lncRNA upstream 1291102 22706066 ~ 22706337 (-) True G42553
AMCG00013138 mRNA downstream 13684 21394276 ~ 21398255 (-) True AMCG00013138
AMCG00013115 mRNA downstream 36775 21351263 ~ 21375164 (-) True AMCG00013115
AMCG00013116 mRNA downstream 61125 21350459 ~ 21350814 (-) True AMCG00013116
AMCG00013110 mRNA downstream 73856 21336157 ~ 21338083 (-) True AMCG00013110
AMCG00013113 mRNA downstream 76808 21328200 ~ 21335131 (-) True AMCG00013113
AMCG00013131 mRNA upstream 33365 21448329 ~ 21449954 (-) True AMCG00013131
AMCG00013136 mRNA upstream 37068 21452032 ~ 21454895 (-) True AMCG00013136
AMCG00013132 mRNA upstream 54065 21469029 ~ 21474368 (-) True AMCG00013132
AMCG00013134 mRNA upstream 73317 21488281 ~ 21492981 (-) True AMCG00013134
AMCG00013133 mRNA upstream 88885 21503849 ~ 21526832 (-) True AMCG00013133
TU52829 other downstream 36176 21337067 ~ 21375763 (-) True G42381
TU52823 other downstream 51832 21350660 ~ 21360107 (-) True G42375
TU52828 other downstream 104246 21306186 ~ 21307693 (-) False AMCG00013112
TU52810 other downstream 110518 21252107 ~ 21301421 (-) True G42366
TU52536 other downstream 866128 20531194 ~ 20545811 (-) True AMCG00013090
TU52837 other upstream 97120 21512084 ~ 21514693 (-) False AMCG00013133
TU53293 other upstream 2429119 23844083 ~ 23847477 (-) True G42749
TU53481 other upstream 3467155 24882119 ~ 24902428 (-) True AMCG00013204
TU53519 other upstream 3610912 25025876 ~ 25029004 (-) False AMCG00013216
TU53623 other upstream 3660429 25075393 ~ 25078244 (-) True G43001

Expression Profile