RNA id: AMCG00013138


Basic Information

Item Value
RNA id AMCG00013138
length 498
RNA type mRNA
GC content 0.47
exon number 4
gene id AMCG00013138
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21394276 ~ 21398255 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTTCTGATCACAACCAATCCCTATGATTTCCCTATGATCAGCCAGGGTCAGATCACTGTGGCCAGCATAGATGACAAAGAGGAGCTGGTTGCCACAGATACAGCCATTGATATTCTGGGCTTCACTAATGATGAGAAAATGGGCATCTACAAGCTGACTGGTGCTGTGATGCACTATGGTAACATGAAGTTCAAGCAGAAGCAACGTGAGGAGCAGGCTGAACCTGACGGCACTGAGGTCTATGAGAAATTGTTCTTGTGGATGGTTGTCCGCATAAACCAGATGCTGGATACCAAGCAGTCCAGACAGAGCTACATTGGGGTGCTGGATATTGCTGGATTCGAGATCTTTGATGTGTTCTTTAAAGCTGGTCTGCTGGGTACCCTTGAGGAGATGCGAGATGAAAAACTGGCCGCACTCATCACTAACACGCAGGCTCTTTGCCGTGGCTTTCTCATGAGAAGGGAATTTGTGAAGATGATGGAAAGGAGGTAA

Function

GO:

id name namespace
GO:0001757 somite specification biological_process
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52831 lncRNA downstream 47442 21346475 ~ 21346834 (-) True G42383
TU52820 lncRNA downstream 83928 21287320 ~ 21310348 (-) True G42372
TU52826 lncRNA downstream 184627 21209265 ~ 21209649 (-) True G42378
TU52824 lncRNA downstream 198926 21194149 ~ 21195350 (-) True G42376
TU52673 lncRNA downstream 503988 20889683 ~ 20890288 (-) False G42278
TU52834 lncRNA upstream 1389 21399644 ~ 21400158 (-) True G42386
TU52822 lncRNA upstream 50637 21448892 ~ 21449281 (-) False AMCG00013131
TU52907 lncRNA upstream 495369 21893624 ~ 21905597 (-) True G42440
TU52919 lncRNA upstream 751326 22149581 ~ 22149792 (-) True G42450
TU53044 lncRNA upstream 1176303 22574558 ~ 22574827 (-) True G42544
AMCG00013115 mRNA downstream 19112 21351263 ~ 21375164 (-) True AMCG00013115
AMCG00013116 mRNA downstream 43462 21350459 ~ 21350814 (-) True AMCG00013116
AMCG00013110 mRNA downstream 56193 21336157 ~ 21338083 (-) True AMCG00013110
AMCG00013113 mRNA downstream 59145 21328200 ~ 21335131 (-) True AMCG00013113
AMCG00013112 mRNA downstream 82970 21300093 ~ 21311306 (-) True AMCG00013112
AMCG00013137 mRNA upstream 14111 21412366 ~ 21422118 (-) True AMCG00013137
AMCG00013131 mRNA upstream 50074 21448329 ~ 21449954 (-) True AMCG00013131
AMCG00013136 mRNA upstream 53777 21452032 ~ 21454895 (-) True AMCG00013136
AMCG00013132 mRNA upstream 70774 21469029 ~ 21474368 (-) True AMCG00013132
AMCG00013134 mRNA upstream 90026 21488281 ~ 21492981 (-) True AMCG00013134
TU52829 other downstream 18513 21337067 ~ 21375763 (-) True G42381
TU52823 other downstream 34169 21350660 ~ 21360107 (-) True G42375
TU52828 other downstream 86583 21306186 ~ 21307693 (-) False AMCG00013112
TU52810 other downstream 92855 21252107 ~ 21301421 (-) True G42366
TU52536 other downstream 848465 20531194 ~ 20545811 (-) True AMCG00013090
TU52821 other upstream 13684 21411939 ~ 21414964 (-) False AMCG00013137
TU52837 other upstream 113829 21512084 ~ 21514693 (-) False AMCG00013133
TU53293 other upstream 2445828 23844083 ~ 23847477 (-) True G42749
TU53481 other upstream 3483864 24882119 ~ 24902428 (-) True AMCG00013204
TU53519 other upstream 3627621 25025876 ~ 25029004 (-) False AMCG00013216

Expression Profile