RNA id: AMCG00013143


Basic Information

Item Value
RNA id AMCG00013143
length 249
RNA type mRNA
GC content 0.45
exon number 2
gene id AMCG00013143
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21529413 ~ 21531624 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATACTCTGGACTTTCTGTGTCACTGTCAATCCCTATAAGTGGTTGCCAGTGTACAATCCAGAGGTTGTTGGAGGATACAGAGGCAAGAAACGTCAGGAAGTCCCCCCCTACATCTTCTCCATTTCTGATAATGCCTACCAGTTCATGCTAACAGATATCCTGGGCTTTAACACTGAAGAAAAGGTTGGCATCTACAAACTAGCAGTTGCTGTGATGCATCATGGGAACATGAAGTTTAAGCAGAAGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52822 lncRNA downstream 80132 21448892 ~ 21449281 (-) False AMCG00013131
TU52830 lncRNA downstream 101697 21340970 ~ 21427716 (-) True G42382
TU52834 lncRNA downstream 129255 21399644 ~ 21400158 (-) True G42386
TU52831 lncRNA downstream 182579 21346475 ~ 21346834 (-) True G42383
TU52820 lncRNA downstream 219065 21287320 ~ 21310348 (-) True G42372
TU52907 lncRNA upstream 362000 21893624 ~ 21905597 (-) True G42440
TU52919 lncRNA upstream 617957 22149581 ~ 22149792 (-) True G42450
TU53044 lncRNA upstream 1042934 22574558 ~ 22574827 (-) True G42544
TU53058 lncRNA upstream 1174442 22706066 ~ 22706337 (-) True G42553
TU53062 lncRNA upstream 1284532 22816156 ~ 22816369 (-) True G42557
AMCG00013139 mRNA downstream 367 21527273 ~ 21529046 (-) True AMCG00013139
AMCG00013133 mRNA downstream 2581 21503849 ~ 21526832 (-) True AMCG00013133
AMCG00013134 mRNA downstream 36432 21488281 ~ 21492981 (-) True AMCG00013134
AMCG00013132 mRNA downstream 55045 21469029 ~ 21474368 (-) True AMCG00013132
AMCG00013136 mRNA downstream 74518 21452032 ~ 21454895 (-) True AMCG00013136
AMCG00013135 mRNA upstream 9809 21541433 ~ 21544389 (-) True AMCG00013135
AMCG00013141 mRNA upstream 14416 21546040 ~ 21549726 (-) True AMCG00013141
AMCG00013130 mRNA upstream 64451 21596075 ~ 21627396 (-) True AMCG00013130
AMCG00013144 mRNA upstream 392978 21924602 ~ 21935718 (-) True AMCG00013144
AMCG00013145 mRNA upstream 492352 22023976 ~ 22039234 (-) True AMCG00013145
TU52819 other downstream 12236 21336217 ~ 21517177 (-) True G42371
TU52837 other downstream 14720 21512084 ~ 21514693 (-) False AMCG00013133
TU52821 other downstream 114449 21411939 ~ 21414964 (-) False AMCG00013137
TU52829 other downstream 153650 21337067 ~ 21375763 (-) True G42381
TU52823 other downstream 169306 21350660 ~ 21360107 (-) True G42375
TU53293 other upstream 2312459 23844083 ~ 23847477 (-) True G42749
TU53481 other upstream 3350495 24882119 ~ 24902428 (-) True AMCG00013204
TU53519 other upstream 3494252 25025876 ~ 25029004 (-) False AMCG00013216
TU53623 other upstream 3543769 25075393 ~ 25078244 (-) True G43001
TU53641 other upstream 3632359 25163983 ~ 25166758 (-) False AMCG00013223

Expression Profile