RNA id: AMCG00013145


Basic Information

Item Value
RNA id AMCG00013145
length 873
RNA type mRNA
GC content 0.49
exon number 3
gene id AMCG00013145
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 22023976 ~ 22039234 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGATACAACACCTCTTGCTTCTTTTGATATATTTGGACCCTCTGAATGTACTCAGTGCCAATCCGGGGAAGAAACGGAATGGTCCTCCTAGGAAGAACCTGAAGAAGGACGTGAACGGTACTGTCGTGGCCACGGTGCCCACCCCGAGAATCACCCAAGTACCGCCGCCCAAAACTGGCAACCATGAAACGTGCCTCGGCTACTACGACGTGAGCGGACAGTTTGACAAGGAGTTTGAATGCAATAACACCGACCACCGTTACTGCTGCGGGACCTGTTTCCTCCGCTTCTGCTGCCAGTTTAAAGAGAACCGATTAAAGCAGAACACTTGCACGAATTATCACAAACCCGACTGGGTCAAAACTCTGCCCCCGTCCCCCGTTCCCACAGGAGGGACTTACGATCCGAATTTGGATCAGACCAACACAACAGTCTACATCATCTGTGGGGTAATAGCTTTTGTTATCATTATCGGAGTTGCTGCGAAAGTTGCTTATGACAAAGCAACGCGACCCCCTCAGGAAATGAATGTCCACAGAGCTCTTGCAGACATCTTAAGGCAACAAGGACCCATTCCAATATCACACTATGAGCGAGAAAACATTGCAGCCATGGATGGATCACCCAAAGAAAACACGCCTGTTCGATCTTCTTCCAAAAACCATTATACTCCTGTCCACACGTCGAAATCAAACCACGGAAGTCATTATGCGAAGGAGAACTTCCGCAGCGGGGGACCGGACCTACACAACTTCATTTCGTCTGGATTCGTGACGTTAGGAAGAGGGCACCTCAAAGGTAACGTGGATCTTTATCTGCCCATTACCAGAGCACATTGTCCCACTGTAAAGTTGGGGAAGAACTCCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52907 lncRNA downstream 118379 21893624 ~ 21905597 (-) True G42440
TU52822 lncRNA downstream 574695 21448892 ~ 21449281 (-) False AMCG00013131
TU52830 lncRNA downstream 596260 21340970 ~ 21427716 (-) True G42382
TU52919 lncRNA upstream 110347 22149581 ~ 22149792 (-) True G42450
TU53044 lncRNA upstream 535324 22574558 ~ 22574827 (-) True G42544
TU53058 lncRNA upstream 666832 22706066 ~ 22706337 (-) True G42553
TU53062 lncRNA upstream 776922 22816156 ~ 22816369 (-) True G42557
TU53237 lncRNA upstream 1739691 23778925 ~ 23779350 (-) True G42704
AMCG00013144 mRNA downstream 88258 21924602 ~ 21935718 (-) True AMCG00013144
AMCG00013130 mRNA downstream 396580 21596075 ~ 21627396 (-) True AMCG00013130
AMCG00013141 mRNA downstream 474250 21546040 ~ 21549726 (-) True AMCG00013141
AMCG00013135 mRNA downstream 479587 21541433 ~ 21544389 (-) True AMCG00013135
AMCG00013143 mRNA downstream 492352 21529413 ~ 21531624 (-) True AMCG00013143
AMCG00013150 mRNA upstream 254094 22293328 ~ 22312757 (-) True AMCG00013150
AMCG00013151 mRNA upstream 280428 22319662 ~ 22367010 (-) True AMCG00013151
AMCG00013153 mRNA upstream 331631 22370865 ~ 22375360 (-) True AMCG00013153
AMCG00013156 mRNA upstream 497925 22537159 ~ 22549507 (-) True AMCG00013156
AMCG00013157 mRNA upstream 532542 22571776 ~ 22572060 (-) True AMCG00013157
TU52819 other downstream 506799 21336217 ~ 21517177 (-) True G42371
TU52837 other downstream 509283 21512084 ~ 21514693 (-) False AMCG00013133
TU52821 other downstream 609012 21411939 ~ 21414964 (-) False AMCG00013137
TU52829 other downstream 648213 21337067 ~ 21375763 (-) True G42381
TU52823 other downstream 663869 21350660 ~ 21360107 (-) True G42375
TU53293 other upstream 1804849 23844083 ~ 23847477 (-) True G42749
TU53481 other upstream 2842885 24882119 ~ 24902428 (-) True AMCG00013204
TU53519 other upstream 2986642 25025876 ~ 25029004 (-) False AMCG00013216
TU53623 other upstream 3036159 25075393 ~ 25078244 (-) True G43001
TU53641 other upstream 3124749 25163983 ~ 25166758 (-) False AMCG00013223

Expression Profile