RNA id: AMCG00013147


Basic Information

Item Value
RNA id AMCG00013147
length 2787
RNA type mRNA
GC content 0.43
exon number 3
gene id AMCG00013147
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 22248497 ~ 22260816 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTGAGCTGGTGGCTGTCGGGCCAGGGCTGGGCTCTTTAAAAAGTGACGTCAGACGCAGGTGTTTCCTGGAGCAGGTACGCGGCGGGAGCAGACAGCGGCACCGAGGGACGAGCTGCTCTCCATTGCCGTTACTCTTCCCTGACAGCACCATGGCTCTCAGGTGTGTCGGACGGTGCTTCCCGTTATTTTCCCTCGGTCTCATTTTCGATGTGATCGGTCTCACCCTGATTTTAGTCGGGATTTTTGCCAACGTGCAGCTGAACGGCAGGTTCTTCGGGGACTTTCTCATCTACACGGGTGCTATCGTGATCTTCCTGAGTCTGATCTGGTGGATCCTGTGGTACACGGGCAACATCGACATGTCTCCCGAAGAGCAGGACGCGCCGGGCAGGAGGAGCCACTTCGAGCAGTGGGCGAGGAAGCTGTCCGAGAGGCTCTCCAAAGGGGGGCTCAAGACCCTGGAAGCCGGGGAGAAGTGCATCGGGGGGAAGGAGCCGAAGAAAGGGCACATCCCCACCCACGTTGCCACCCGCATTACCTGGAAGACGGCGGACCGCAATGGCTACGACAACAAAGGCTTTGATGCCGTTTCTGATCTCGCCGCACACGAAGGGAAAAATGTGGAGCTCAATACTCTGGACAAGTCCGAGGCGACTTTACAGCACCTGGAAGAGGCGAAAGCGGAAAGACTTCTCTTTTGGGACTTTTTGGTTTTATCGGGGCCGATTCTCATTGGTCTCAGCCTCCTCTTCTGGATATTGTGGTACTTGGGGAATCTTACCGTCCCGTATGAAGAGCTGAAGTGGATATCAAGATTAGAAATCTCAGGAGAACtgtgaagaagatgaagaatgATGAAGGATGCCTTTTGCATACCAGTCCTGGCAACGAAGCCTCAAAATCAGTGGGATTTATATTACACGGACAcatcctcactgaaggaatctGCTAGCGTGACGCGTTACAATTTCTTTCAAGTTTCACATTTTGAGCCTCggttgctgttattatttaagtaCCAGATGAAGACAGAAACCTATAAGGGTGTTAACCATGCTTCTTCCTTTGCAATAGTGGGTGTAAATACTATAGTTGTGTAAGCAAAGTAAGGATAATCACTGAAAagcttaatacattatttttgtacaagattgtttacacatttttaagaaggatagtgaaaatgttaaactgtAGAGGCTTTGGGACTTTTTAATCAGAAATCTGACATCAGAAAAGACATTCAGTTAGGCCTGGCAGAGATCATTCAGGATACAGTTCCTATAATCCTATGTATgctgtttgtatatataatatatatgacaCTATAATGAGCGTCTGTGTGGATCCTGAGTTGGGAAGAGGATGCGGCCTAACAGGAAGATTGAAGAACACTCTGAAATCACCAGGGCTCTGTACTTGTGGACATCAGTCATTGCACATTAACAGCCCTTATAAAGTACAGCTTCTGGTCCACGATGACACTTGTATTAATTGGCTCATTAATGAGCTGAAAGTCGGGTCTGTAATTCAGGGATATTTGAGAGAGATTCAAAAGTTGGGATGACAGgacaaaacacatgcacatattttCATTCTGGTCCATGTTTTTGACCACTTTGTGTACAAATGGGCATATTCTTTAAAATTGACATGCATATCTCTGTACACATCTTTTAGTGACTACATTATGTGAGATAACAAAACCATTGGAATGTAATACGTTCTATTTTTTAAgatctatttttgtttctaaCCTGTTACTGTTTTCGGTACCCAccctgtttctttgtgttagGAAACGTCACTGTCATACCATTTTAATCCTCCGTACACCAGCACTGCAGAAATGTGGGCCAATAAATATTCCCAGGTTCTGAAGAGAATTTCTACCGTTTGTGGTGTTCTTTCATCCAGTTTCTCAGACGAGGGCATTATTCTTCTCTGTTGATATTGTGATTATGATAAAGTTAATGATTTACATAATAGTATTTGTGATTACCTATAAGAGAGCTTAGAGAAGTGGTGATAAAGTTTTTTCTAGTGTATTCAGCAAGCGAACGAGCAAGGAAAAGCCTAAATTGCTGAGTTTTAGATAGACTTTGAACTtggtatctatctatctaatctATCCTCTGTCTAGGAGAGGGAACTCTTAAGATACTTCAATGAACAGACAAAACTATAGTGTCACCACAGTcttcaataattaattgataagATACTAATTTCACAGAGTTTGTTGggggtaaacacacacatacacacatatgagCAATAATCAGTAATAACTAATTTAGGATAACAATGAATACCACACTTGCGTCATTTAATGTTGCTGATCCGAGCACAGTGGCAAATTTAATGCTGTTTGAGATCAGCTTTGGAACTTGAAGGCAGCGATATGATAATAGGGACATCAACGCTGTTAAAAGTGTCTCCCAGACTTCTAACAAACCAACATCTGTTGCCTTTTCTTCATTAATCAGATCACTCGGCTCCGTTACTTAAAAGTGGCAGAGTGTGTCATTACTAATGTAGCCCTTTGGCTTGTCTGCCATCaagaaaaatctgaaactgACATCAGGCTGTTTTGCCGAATGGTATTGTGGGACACAGTGAGAAGCATTTTATTCGGGCCCATGGGATTTGGTTTGCTGTTTATGCAAGACTCCAGCTCATTGCACTCATGGCAGATATCCCCTACTACTTCCTTAGGTACACTGGCTTTACATATAAGTAGCAGAACAAACAACCTCTTCACATGATTGGTAACAGAGTCAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52918 lncRNA upstream 98710 22149585 ~ 22149787 (+) True G42449
TU52917 lncRNA upstream 99984 22148294 ~ 22148513 (+) True G42448
TU52783 lncRNA upstream 647529 21528781 ~ 21600968 (+) True G42350
TU52774 lncRNA upstream 739673 21472716 ~ 21508824 (+) True G42345
TU52776 lncRNA upstream 744573 21498973 ~ 21503924 (+) True G42347
TU52939 lncRNA downstream 5541 22266357 ~ 22266636 (+) True G42459
TU52945 lncRNA downstream 39757 22300573 ~ 22304742 (+) True G42464
TU52982 lncRNA downstream 254048 22514864 ~ 22570081 (+) True G42488
TU53014 lncRNA downstream 431116 22691932 ~ 22692216 (+) True G42518
TU53059 lncRNA downstream 600999 22861815 ~ 22862982 (+) True G42554
AMCG00013148 mRNA upstream 20001 21930055 ~ 22228496 (+) True AMCG00013148
AMCG00013146 mRNA upstream 336756 21773242 ~ 21911741 (+) True AMCG00013146
AMCG00013129 mRNA upstream 663480 21551172 ~ 21585017 (+) True AMCG00013129
AMCG00013127 mRNA upstream 701441 21545619 ~ 21547056 (+) True AMCG00013127
AMCG00013125 mRNA upstream 761804 21486231 ~ 21486693 (+) True AMCG00013125
AMCG00013149 mRNA downstream 15526 22276342 ~ 22292501 (+) True AMCG00013149
AMCG00013152 mRNA downstream 118419 22379235 ~ 22470187 (+) True AMCG00013152
AMCG00013154 mRNA downstream 236577 22497393 ~ 22498928 (+) True AMCG00013154
AMCG00013155 mRNA downstream 252013 22512829 ~ 22514649 (+) True AMCG00013155
AMCG00013158 mRNA downstream 388360 22649176 ~ 22655621 (+) True AMCG00013158
TU52922 other upstream 2707 22242429 ~ 22245790 (+) True G42453
TU52772 other upstream 761689 21426660 ~ 21486808 (+) True G42344
TU52771 other upstream 761689 21484907 ~ 21486808 (+) False G42344
TU52773 other upstream 761689 21485321 ~ 21486808 (+) False G42344
TU52756 other upstream 829710 21370843 ~ 21418787 (+) True AMCG00013126
TU53407 other downstream 2486676 24747492 ~ 24749395 (+) True G42846
TU53419 other downstream 2507608 24768424 ~ 24770148 (+) True G42858
TU53706 other downstream 3259351 25520167 ~ 25521681 (+) False AMCG00013236
TU53847 other downstream 3994163 26254979 ~ 26257842 (+) False AMCG00013255
TU53939 other downstream 4264010 26524826 ~ 26540049 (+) True G43263

Expression Profile