RNA id: TU52933


Basic Information

Item Value
RNA id TU52933
length 1595
lncRNA type sense_over
GC content 0.41
exon number 2
gene id AMCG00013147
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 22248497 ~ 22260816 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caaaaatgtaaggCGTGTTACAATGTGACTCTCCGTGCTAAACAAAGGCATCTGCCCGTCTTTAAAATAGGTGTGTAGATCGTTTCCCTGCTCATTTCTCCGTGGCCATGGACGCTGTGAAGCCTCTGGGCCGGTGCCTGCTGTTCTTCTTCTTGGCCGTGCTGTTTGATGTGGTCGGTCTCATCCTCTTTCTGATTGGGATTTTCGCCCCGCTGAGCTTTTGGGACTTTTTGGTTTTATCGGGGCCGATTCTCATTGGTCTCAGCCTCCTCTTCTGGATATTGTGGTACTTGGGGAATCTTACCGTCCCGTATGAAGAGCTGTGAGTGCGGTGAAGTGCGCTTGAGcaacataacattaaaacacGTGTACAAGCTAAACCGACGCAGACTGTCAGTGCACAAGCTGACTCGGGTTTGGAAATACAGTACCGGTTTAATGTGCGGGATTCAGACCGGATACACGGGCTCCTGGGGATGTTCAACATGCATCATCTCTCTGAAAAGGTTCAAGAAGTGGATATCAAGATTAGAAATCTCAGGAGAACtgtgaagaagatgaagaatgATGAAGGATGCCTTTTGCATACCAGTCCTGGCAACGAAGCCTCAAAATCAGTGGGATTTATATTACACGGACAcatcctcactgaaggaatctGCTAGCGTGACGCGTTACAATTTCTTTCAAGTTTCACATTTTGAGCCTCggttgctgttattatttaagtaCCAGATGAAGACAGAAACCTATAAGGGTGTTAACCATGCTTCTTCCTTTGCAATAGTGGGTGTAAATACTATAGTTGTGTAAGCAAAGTAAGGATAATCACTGAAAagcttaatacattatttttgtacaagattgtttacacatttttaagaaggatagtgaaaatgttaaactgtAGAGGCTTTGGGACTTTTTAATCAGAAATCTGACATCAGAAAAGACATTCAGTTAGGCCTGGCAGAGATCATTCAGGATACAGTTCCTATAATCCTATGTATgctgtttgtatatataatatatatgacaCTATAATGAGCGTCTGTGTGGATCCTGAGTTGGGAAGAGGATGCGGCCTAACAGGAAGATTGAAGAACACTCTGAAATCACCAGGGCTCTGTACTTGTGGACATCAGTCATTGCACATTAACAGCCCTTATAAAGTACAGCTTCTGGTCCACGATGACACTTGTATTAATTGGCTCATTAATGAGCTGAAAGTCGGGTCTGTAATTCAGGGATATTTGAGAGAGATTCAAAAGTTGGGATGACAGgacaaaacacatgcacatattttCATTCTGGTCCATGTTTTTGACCACTTTGTGTACAAATGGGCATATTCTTTAAAATTGACATGCATATCTCTGTACACATCTTTTAGTGACTACATTATGTGAGATAACAAAACCATTGGAATGTAATACGTTCTATTTTTTAAgatctatttttgtttctaaCCTGTTACTGTTTTCGGTACCCAccctgtttctttgtgttagGAAACGTCACTGTCATACCATTTTAATCCTCCGTACACCAGCACTGCAGAAATGTGGGCCAATAAATATTCCCAGGTTCTGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52918 lncRNA upstream 107719 22149585 ~ 22149787 (+) True G42449
TU52917 lncRNA upstream 108993 22148294 ~ 22148513 (+) True G42448
TU52783 lncRNA upstream 656538 21528781 ~ 21600968 (+) True G42350
TU52774 lncRNA upstream 748682 21472716 ~ 21508824 (+) True G42345
TU52939 lncRNA downstream 6445 22266357 ~ 22266636 (+) True G42459
TU52945 lncRNA downstream 40661 22300573 ~ 22304742 (+) True G42464
TU52982 lncRNA downstream 254952 22514864 ~ 22570081 (+) True G42488
TU53014 lncRNA downstream 432020 22691932 ~ 22692216 (+) True G42518
TU53059 lncRNA downstream 601903 22861815 ~ 22862982 (+) True G42554
AMCG00013148 mRNA upstream 29010 21930055 ~ 22228496 (+) True AMCG00013148
AMCG00013146 mRNA upstream 345765 21773242 ~ 21911741 (+) True AMCG00013146
AMCG00013129 mRNA upstream 672489 21551172 ~ 21585017 (+) True AMCG00013129
AMCG00013127 mRNA upstream 710450 21545619 ~ 21547056 (+) True AMCG00013127
AMCG00013125 mRNA upstream 770813 21486231 ~ 21486693 (+) True AMCG00013125
AMCG00013149 mRNA downstream 16430 22276342 ~ 22292501 (+) True AMCG00013149
AMCG00013152 mRNA downstream 119323 22379235 ~ 22470187 (+) True AMCG00013152
AMCG00013154 mRNA downstream 237481 22497393 ~ 22498928 (+) True AMCG00013154
AMCG00013155 mRNA downstream 252917 22512829 ~ 22514649 (+) True AMCG00013155
AMCG00013158 mRNA downstream 389264 22649176 ~ 22655621 (+) True AMCG00013158
TU52922 other upstream 11716 22242429 ~ 22245790 (+) True G42453
TU52772 other upstream 770698 21426660 ~ 21486808 (+) True G42344
TU52771 other upstream 770698 21484907 ~ 21486808 (+) False G42344
TU52773 other upstream 770698 21485321 ~ 21486808 (+) False G42344
TU52756 other upstream 838719 21370843 ~ 21418787 (+) True AMCG00013126
TU53407 other downstream 2487580 24747492 ~ 24749395 (+) True G42846
TU53419 other downstream 2508512 24768424 ~ 24770148 (+) True G42858
TU53706 other downstream 3260255 25520167 ~ 25521681 (+) False AMCG00013236
TU53847 other downstream 3995067 26254979 ~ 26257842 (+) False AMCG00013255
TU53939 other downstream 4264914 26524826 ~ 26540049 (+) True G43263

Expression Profile