RNA id: AMCG00013149


Basic Information

Item Value
RNA id AMCG00013149
length 1881
RNA type mRNA
GC content 0.55
exon number 9
gene id AMCG00013149
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 22276342 ~ 22292501 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGTGGTAAGCGGGGTGTCCGGGCCGGCGGTCGCCCGGCTTGAGGGCCGTGAGTTCGAGTACATGATGAAGAAGCGCTCGGTGACCATCGGGCGCAACTCCTCACAGGGCTCCGTGGACGTGAGCATGGGCCACTCGAGCTTCATCTCCCGCCGACACCTGGAGATCTTCACCGCCGGCGAGGACGGCACCGGCGGTGGAGATTTCTACCTGCGCTGCCTCGGCAAAAACGGGGTGTTTGTAGACGGGGTGTTTCAAAGACGGGGGGCCCCGCCACTGCAGCTCCCCAGAGTGTGCACCTTCAGGTTTCCCAGCACAAATATCAAGATCACATTTACAGCTCTGTCCAGTGACAAGAAAGAAAAGCGGGAGGCGCCAGAATCGCCAGTAAAGCCAGTGCAGCCCCAGATCTCACCCTTAACAATAAACATTCCAGACAACATCGCACATTTAATGAGTCCACTTCCTTCCCCTACAGGAACTATCAGtgCTGCCAACTCTTGTCCATCGAGTCCACGGGGAGCAGGGTCATCCAGCTACAGAATGGGCCGCGTTATTACCTCTGATCTGCAGCTTATAGGGGACAATTCACAGTCCGAAAATGATAAAGAAGCATCTGGAGGAGATAGCCCCAAGGATGACTCCAAGCCACCATACTCGTATGCACAGTTAATAGTCCAAGCGATCACAATGGCACCGGACAAGCAACTCACACTAAATGGAATATACACGCATATCACCAAAAACTATCCTTACTACAGGACCGCAGACAAGGGCTGGCAGAACTCAATCCGTCACAATCTTTCTCTGAATCGCTACTTTATTAAAGTGCCCCGATCACAAGAAGAGCCTGGCAAAGGTTCCTTCTGGAGGATAGACCCTGCGTCAGAGAGCAAACTCATTGAACAGGCATTTAGGAAACGAAGGCCAAGGGGTGTTCCCTGCTTTAGGACACCTCTTGGACCCCTGTCATCTCGAAGTGCCCCGGCCTCCCCAAATCACTCGGGGGTGCTGTCGGCTCACTCCAGCGGGGTGCAGACGCCGGAGAGCCTGTCTCGAGAAGGCTCTCCTGTCCCAATGGAGCAAGAGCCAGCCCCCGCCCCAGCGCCTGCCCCCGCCCCCGTCGTCCAGCCCAAACTAGCAGTAATACAGGAGGCCCGCTTCGCACAGAGTGCACCAGgttcACCTCTCAATAGCCAACCTGTTTTAATCACAGTCCAACGCCAATTACCACAGAGCATGAAACCGGTCACTTACACTGTTGCCACTCCCGTGACGACCTCCACATCCCAGCAGCCGATGATGCAGACTGTCCATGTCGTCCATCAGATCCCCGCTGTGTCGGTGACCAGTGTGGCCGGATTAACAGCAGCCAATACCTACACGGTGGCTGGTCAGGCCATGGTCACTCAAGCAGCACTGGTCAATCAGACTAAAACTGAGCCCCAGGAGAATGGAGAGCACAAAGAAATCAAAGTGAAAGTAGAACCTGTTCCTGCCATCACCCACGCTACTATCGGAGCTGCTGGTCGTATCATTCAGACGTCTCAGGCCACACCTTTACAGACAGTCACCATCGTGCAACAAGCCCCTCTCGGGCAGCACCAGCTACCAATCAAAACCATTACACAGAACGGGACTCACGTGGTCCCCATCACCACTGCCATTCAAGGACAGGTCAACACCGCTGTCGCAAGCCCGCTACATATGTTGGCAACCCACGCTTCTGCGTCGGCATCCCTTCCAACGAAACGGCAGAACGGAGACCAGGCAGAGCAGCCAGAACTCAAACGTATCAAAACTGATGAAGGAGAGAGCATAGTCATCGCTGTTAACATGGACACTCCGGCCGTGAGCGAACAAGGCAGCCAGAACTAA

Function

GO: NA

KEGG:

id description
K09404 FOXK; forkhead box protein K

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52939 lncRNA upstream 9706 22266357 ~ 22266636 (+) True G42459
TU52926 lncRNA upstream 16430 22257506 ~ 22259912 (+) False AMCG00013147
TU52933 lncRNA upstream 16430 22257506 ~ 22259912 (+) False AMCG00013147
TU52918 lncRNA upstream 126555 22149585 ~ 22149787 (+) True G42449
TU52917 lncRNA upstream 127829 22148294 ~ 22148513 (+) True G42448
TU52945 lncRNA downstream 8072 22300573 ~ 22304742 (+) True G42464
TU52982 lncRNA downstream 222363 22514864 ~ 22570081 (+) True G42488
TU53014 lncRNA downstream 399431 22691932 ~ 22692216 (+) True G42518
TU53059 lncRNA downstream 569314 22861815 ~ 22862982 (+) True G42554
TU53136 lncRNA downstream 1262171 23554672 ~ 23560660 (+) True G42619
AMCG00013147 mRNA upstream 15526 22248497 ~ 22260816 (+) True AMCG00013147
AMCG00013148 mRNA upstream 47846 21930055 ~ 22228496 (+) True AMCG00013148
AMCG00013146 mRNA upstream 364601 21773242 ~ 21911741 (+) True AMCG00013146
AMCG00013129 mRNA upstream 691325 21551172 ~ 21585017 (+) True AMCG00013129
AMCG00013127 mRNA upstream 729286 21545619 ~ 21547056 (+) True AMCG00013127
AMCG00013152 mRNA downstream 86734 22379235 ~ 22470187 (+) True AMCG00013152
AMCG00013154 mRNA downstream 204892 22497393 ~ 22498928 (+) True AMCG00013154
AMCG00013155 mRNA downstream 220328 22512829 ~ 22514649 (+) True AMCG00013155
AMCG00013158 mRNA downstream 356675 22649176 ~ 22655621 (+) True AMCG00013158
AMCG00013161 mRNA downstream 380701 22673202 ~ 22858651 (+) True AMCG00013161
TU52922 other upstream 30552 22242429 ~ 22245790 (+) True G42453
TU52772 other upstream 789534 21426660 ~ 21486808 (+) True G42344
TU52771 other upstream 789534 21484907 ~ 21486808 (+) False G42344
TU52773 other upstream 789534 21485321 ~ 21486808 (+) False G42344
TU52756 other upstream 857555 21370843 ~ 21418787 (+) True AMCG00013126
TU53407 other downstream 2454991 24747492 ~ 24749395 (+) True G42846
TU53419 other downstream 2475923 24768424 ~ 24770148 (+) True G42858
TU53706 other downstream 3227666 25520167 ~ 25521681 (+) False AMCG00013236
TU53847 other downstream 3962478 26254979 ~ 26257842 (+) False AMCG00013255
TU53939 other downstream 4232325 26524826 ~ 26540049 (+) True G43263

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051075 True 3489 mRNA 0.51 9 NC_007114.7 11779689 ~ 11828206 (-)
grasscarp (Ctenopharyngodon idella) CI01000047_07445474_07451503.mRNA True 2406 mRNA 0.56 9 CI01000047 7444859 ~ 7451503 (-)