RNA id: AMCG00013151


Basic Information

Item Value
RNA id AMCG00013151
length 837
RNA type mRNA
GC content 0.53
exon number 6
gene id AMCG00013151
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 22319662 ~ 22367010 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCCACAAAGGCAGCCCCGCAAAGGCATACGACTTCCTGCTGAAGTTTCTTTTGGTCGGAGACAGTGATGTTGGGAAAGGGGAGATCTTGGCAAGCTTGCAGGATGGAGCCAGCGAGTCTCCTTATGGATACAACATGGGAATTGATTACAAGACGACAACCATCCTTTTAGATGGCCGGAGAGTCAAACTACAGCTCTGGGACACTTCTGGCCAGGGGAGGTTTTGCACCATATTCCGTTCCTACTCCAGAGGAGCCCAGGGCGTGATCCTGGTTTATGACATCACCAATCGCTGGTCTTTTGATGGGATTGACAGATGGATTAAAGAGATTGATGAGCATGCTCCAGGTGTGCCAAAGATCCTGGTGGGAAACAGACTGCACTTGGCCTACAAGAGACAGGTGACGACAGAGCAAGCTCAAGCTTATGCAGAACGCCTGGGCATCACTTTCTTCGAGGTCAGCCCTCTGTGCAACTTCAACATCACGGAGTCCTTCACTGAGCTGGCCCGGATAGTGCTCATGAGACACGGCATGGAAAGACTCTGGAGGCCCAACAAAGTGTTGAGCCTCCAAGACCTCTGCTGTCGTGCCATTGTGTCCTGTACACCAGTTCACCTGGTGGACAAGCTCCCCCTCCCTGTTGCCTTAAAGAGCCACCTCAAGTCCTTCTCCATGGCCAATGGCTTGAATGCCAGGATGATGCACGGACGCTCATACTCTCTCACCgccaacagcagcaacaaaagGAACAGCCTGAAGAAATCCAAAGTCATCCGCGCCCCCCAGAGCCCCTCACAGAGCTGCGCCAGGAACAGCTGCAAGATCTCCTAG

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0016567 protein ubiquitination biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07928 RAB40; Ras-related protein Rab-40

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52919 lncRNA downstream 169870 22149581 ~ 22149792 (-) True G42450
TU52907 lncRNA downstream 414065 21893624 ~ 21905597 (-) True G42440
TU52822 lncRNA downstream 870381 21448892 ~ 21449281 (-) False AMCG00013131
TU52834 lncRNA downstream 919504 21399644 ~ 21400158 (-) True G42386
TU52831 lncRNA downstream 972828 21346475 ~ 21346834 (-) True G42383
TU53044 lncRNA upstream 207548 22574558 ~ 22574827 (-) True G42544
TU53058 lncRNA upstream 339056 22706066 ~ 22706337 (-) True G42553
TU53062 lncRNA upstream 449146 22816156 ~ 22816369 (-) True G42557
TU53237 lncRNA upstream 1411915 23778925 ~ 23779350 (-) True G42704
TU53286 lncRNA upstream 1461036 23828046 ~ 23839146 (-) False AMCG00013184
AMCG00013150 mRNA downstream 6905 22293328 ~ 22312757 (-) True AMCG00013150
AMCG00013145 mRNA downstream 280428 22023976 ~ 22039234 (-) True AMCG00013145
AMCG00013144 mRNA downstream 383944 21924602 ~ 21935718 (-) True AMCG00013144
AMCG00013130 mRNA downstream 692266 21596075 ~ 21627396 (-) True AMCG00013130
AMCG00013141 mRNA downstream 769936 21546040 ~ 21549726 (-) True AMCG00013141
AMCG00013153 mRNA upstream 3855 22370865 ~ 22375360 (-) True AMCG00013153
AMCG00013156 mRNA upstream 170149 22537159 ~ 22549507 (-) True AMCG00013156
AMCG00013157 mRNA upstream 204766 22571776 ~ 22572060 (-) True AMCG00013157
AMCG00013160 mRNA upstream 243592 22610602 ~ 22631301 (-) True AMCG00013160
AMCG00013159 mRNA upstream 277793 22644803 ~ 22645207 (-) True AMCG00013159
TU52819 other downstream 802485 21336217 ~ 21517177 (-) True G42371
TU52837 other downstream 804969 21512084 ~ 21514693 (-) False AMCG00013133
TU52821 other downstream 904698 21411939 ~ 21414964 (-) False AMCG00013137
TU52829 other downstream 943899 21337067 ~ 21375763 (-) True G42381
TU52823 other downstream 959555 21350660 ~ 21360107 (-) True G42375
TU53293 other upstream 1477073 23844083 ~ 23847477 (-) True G42749
TU53481 other upstream 2515109 24882119 ~ 24902428 (-) True AMCG00013204
TU53519 other upstream 2658866 25025876 ~ 25029004 (-) False AMCG00013216
TU53623 other upstream 2708383 25075393 ~ 25078244 (-) True G43001
TU53641 other upstream 2796973 25163983 ~ 25166758 (-) False AMCG00013223

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00010451 False 2047 mRNA 0.42 6 NC_007123.7 32039177 ~ 32066470 (-)
grasscarp (Ctenopharyngodon idella) CI01000055_02608904_02621376.mRNA True 1130 mRNA 0.49 8 CI01000055 2608904 ~ 2621462 (+)